Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0790 ATGGCTATTGTTCTTCATCGTATAATTTCTTTTGCAGTACTTTTTTCTCTTCTGATTAACCCTTGTTATTGCCTCAACCCTAAATTGTTCAATGTTTCTGAAATTCAAAATGTTAATGATCCATGGCAAATGGCAATAGCTACATGGTATGGAGCACCAGAAGGTGCTGGATCAGATGGGGGTGCATGTGGATATGGTGAAAGTATAGAGTATCCTCCACTTTCTAAAATGATATCAGCTGGAGGTCCATCTATTTTCCTTGAGGGTAGAGGATGTGGTGCTTGTTATCAGGTGAAATGCACAGAAAATAGTGCATGCTCAAGAAATCCTGTGACTGTGATGATCACTGATAGTTGCCCTGGATGTGCACCTATCCAGTTTGATCTAAGTGGAACTGCATTTGGTTCCCTTGCAAATAATGGCCAGGCTAATAATCTTCGTAATGCTGGAAGAATTAATGTTCAATACCAAAGGGTTGCATGCTCTTTTGGGACATCAATAACATTTGCAGTCGATAGTGGAGCCAACCCATACTATTTTGCTACAGAAATAGAATATGAAAATGGAGATGGTGACATTGTATCTGTAGAATTGAATCAATCAAGAAGATGGATTCCAATGCAACGTTCTTGGGGTGCAAGATGGGCTTTGAACTCAGGTTCACAATTGCAACCTCCATTTTCCATTAAGATCACAGAAAATGGAAATGGAAAGTTCAACACTATTATAGCTTACAATGTGATTCCAAGAAATTGGCAACCTGGCAAAGTTTATCGTTCATTGGTTAATTTTAAGAATCTATGA 804 0.3856 MAIVLHRIISFAVLFSLLINPCYCLNPKLFNVSEIQNVNDPWQMAIATWYGAPEGAGSDGGACGYGESIEYPPLSKMISAGGPSIFLEGRGCGACYQVKCTENSACSRNPVTVMITDSCPGCAPIQFDLSGTAFGSLANNGQANNLRNAGRINVQYQRVACSFGTSITFAVDSGANPYYFATEIEYENGDGDIVSVELNQSRRWIPMQRSWGARWALNSGSQLQPPFSIKITENGNGKFNTIIAYNVIPRNWQPGKVYRSLVNFKNL* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0790 267 PANTHER EXPANSIN-B3 2 267 - -
Mtr4g0790 267 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 60 166 IPR007112 -
Mtr4g0790 267 Gene3D - 29 162 IPR036908 -
Mtr4g0790 267 SUPERFAMILY Barwin-like endoglucanases 36 163 IPR036908 -
Mtr4g0790 267 Pfam Expansin C-terminal domain 167 249 IPR007117 -
Mtr4g0790 267 Gene3D - 163 265 IPR036749 -
Mtr4g0790 267 SUPERFAMILY PHL pollen allergen 166 260 IPR036749 -
Mtr4g0790 267 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 260 IPR007117 -
Mtr4g0790 267 PANTHER EXPANSIN-LIKE PROTEIN B1 2 267 - -
Mtr4g0790 267 Pfam Lytic transglycolase 79 156 IPR009009 -
Mtr4g0790 267 PRINTS Major pollen allergen Lol pI signature 80 91 IPR005795 GO:0005576|GO:0019953
Mtr4g0790 267 PRINTS Major pollen allergen Lol pI signature 100 110 IPR005795 GO:0005576|GO:0019953
Mtr4g0790 267 PRINTS Major pollen allergen Lol pI signature 138 153 IPR005795 GO:0005576|GO:0019953
Mtr4g0790 267 PRINTS Major pollen allergen Lol pI signature 169 184 IPR005795 GO:0005576|GO:0019953
Mtr4g0790 267 PRINTS Major pollen allergen Lol pI signature 185 200 IPR005795 GO:0005576|GO:0019953
Mtr4g0790 267 PRINTS Major pollen allergen Lol pI signature 236 253 IPR005795 GO:0005576|GO:0019953
Mtr4g0790 267 PRINTS Expansin/Lol pI family signature 41 56 IPR007118 GO:0005576
Mtr4g0790 267 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Mtr4g0790 267 PRINTS Expansin/Lol pI family signature 82 100 IPR007118 GO:0005576
Mtr4g0790 267 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576
Mtr4g0790 267 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576
Mtr4g0790 267 PRINTS Expansin/Lol pI family signature 246 260 IPR007118 GO:0005576
Mtr4g0790 267 SMART dpbb_1 78 156 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0790 Mtr-Chr4 10196769 10199370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0790 20 264 Expansin Gene Family AT1G65680 53.386 4.73e-97 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0790 - - gmx:100786475 375.555