Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0789 ATGGCTTTGATTGTGGATCAACAATCAAACTTCAAACACTTTTGTAAAATTTGCAAAAAAGGCTTCGGATGTGGAAGAGCATTAGGTGGACATATGAGAGCTCATGGCATAGGCGATGAAACAAGTCAAATGGACGACGATGATCCGGCGAGCGATTGGGAAGGTGGCAATGTCCCACCAAGTAACAAACGTATGTATTCTTTAAGAACAAATCCTAATAAGCTAAAAAGTTGTAGGGTGTGTGAGCATTGTGGCAAAGAATTTTTTTCTTGGAAATCATTCCTCGAACATGGAAAATGCAATTCAGACGACGCGGATGAAGAGTTTATCATATCCTCTCCAGAATCTGACGCCATGGCAGATGATGGTGATGGCGTCAGTGCCAGGAGAGGATGTGGCTGGTCGAAAAGGAAAAGGTCGATGCGAACTAAAGTAGGCAGTTATAATAACAATTATAATAATCCTTCTAGTGAAGAAGAAGATCTAGCAAATTGTTTAATGATGTTGTCCAATGCTATTGTTGATCCTCTTGAGGTTGAACCGGAAGAATCATGTGCCTCCGCTAGCAAAGATGAAGAAAGAAGAAACCCTATGAATTTTATTGCACCATTGTCTTATAGAATCCCCTATGAAAACAACAATAACAACAATAAAGCCAAAGGTGTTGCAAAAGGGTTATTTGAATGCAAAGCATGCAAAAAAGTTTTCAACTCACATCAAGCATTAGGTGGCCATAGAGCAAGTCACAAAAAGGTTAAGGGATGTTTTGCAGCAAGGCTTGATCAAAACCCTGATGATAGTATTGTTGAGGATGATGTCATCACACAAGATGAATTTTTTCCATCAAAACCAAACTCAACCCTACAATATGATCATGGCACTTCTAACAACCCTACATTAATGGCTTCTTCATCCAAGAGAAAATCCAAAGTACATGAATGCTCAATTTGTCATAGGAGTTTCTCTTCCGGACAAGCATTAGGTGGTCACAAGAGATGTCATTGGATCACATCAAATGCACCCGACACATCGACATTGGCTAGGTTTCAACAATTTCAAGACCAAATAGAACAAATACCTAAATTTGATAACTCTTCTGAGCCAATTGATCTCAAACTTGACCTTAATCTTCCGGCTCCGACAAATACACAAATTTACTTGCAACCAACATGGGGTGCAAATTCAAGTGCAACAAAGGACAACAAGATCAAAGAGGATAATAACAATAGCCAACAAAATCAAAACAAAAACCTAGTTGATCAAAATAATGAAACTCAAGAGAAAAACAAAAACAACAACCTTAAGACATTGGTACAAAATGTTGATAATGAAGATGATAGCAAGGTCAAGCTGGCAAAATTAAGTGAGTTAAAGGATGTAATTAACATTGGTGGAAGTTCTTCACCATGGTTGCAAGTTGGAATTGGTACAACAACTGATGTGAGGAATGATACGTAA 1458 0.382 MALIVDQQSNFKHFCKICKKGFGCGRALGGHMRAHGIGDETSQMDDDDPASDWEGGNVPPSNKRMYSLRTNPNKLKSCRVCEHCGKEFFSWKSFLEHGKCNSDDADEEFIISSPESDAMADDGDGVSARRGCGWSKRKRSMRTKVGSYNNNYNNPSSEEEDLANCLMMLSNAIVDPLEVEPEESCASASKDEERRNPMNFIAPLSYRIPYENNNNNNKAKGVAKGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDQNPDDSIVEDDVITQDEFFPSKPNSTLQYDHGTSNNPTLMASSSKRKSKVHECSICHRSFSSGQALGGHKRCHWITSNAPDTSTLARFQQFQDQIEQIPKFDNSSEPIDLKLDLNLPAPTNTQIYLQPTWGANSSATKDNKIKEDNNNSQQNQNKNLVDQNNETQEKNKNNNLKTLVQNVDNEDDSKVKLAKLSELKDVINIGGSSSPWLQVGIGTTTDVRNDT* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0789 485 MobiDBLite consensus disorder prediction 390 416 - -
Mtr4g0789 485 MobiDBLite consensus disorder prediction 36 62 - -
Mtr4g0789 485 Pfam C2H2-type zinc finger 13 35 - -
Mtr4g0789 485 Pfam C2H2-type zinc finger 227 251 - -
Mtr4g0789 485 Pfam C2H2-type zinc finger 311 336 - -
Mtr4g0789 485 Gene3D Classic Zinc Finger 225 334 - -
Mtr4g0789 485 Gene3D Classic Zinc Finger 11 100 - -
Mtr4g0789 485 Coils Coil 401 435 - -
Mtr4g0789 485 PANTHER OS02G0659100 PROTEIN 1 484 - -
Mtr4g0789 485 ProSitePatterns Zinc finger C2H2 type domain signature. 229 249 IPR013087 -
Mtr4g0789 485 MobiDBLite consensus disorder prediction 280 302 - -
Mtr4g0789 485 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Mtr4g0789 485 ProSiteProfiles Zinc finger C2H2 type domain profile. 227 254 IPR013087 -
Mtr4g0789 485 PANTHER OS02G0659100 PROTEIN 1 484 - -
Mtr4g0789 485 ProSiteProfiles Zinc finger C2H2 type domain profile. 312 334 IPR013087 -
Mtr4g0789 485 SUPERFAMILY beta-beta-alpha zinc fingers 13 98 IPR036236 -
Mtr4g0789 485 ProSitePatterns Zinc finger C2H2 type domain signature. 314 334 IPR013087 -
Mtr4g0789 485 SMART c2h2final6 13 35 IPR013087 -
Mtr4g0789 485 SMART c2h2final6 227 249 IPR013087 -
Mtr4g0789 485 SMART c2h2final6 312 334 IPR013087 -
Mtr4g0789 485 SMART c2h2final6 79 99 IPR013087 -
Mtr4g0789 485 SUPERFAMILY beta-beta-alpha zinc fingers 226 334 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0789 Mtr-Chr4 10180425 10181915 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0789 136 377 C2H2 Transcription Factor Family AT1G02040 36.437 3.17e-32 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr4g0789 zf-C2H2_6 1.6e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0789 - - gmx:100793846 699.508