Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0787 ATGGCTAGGAAGAAGGTGAAACTCGCTTTTATCTCCAATGACTCAACAAGAAAGGCGACCTATAAGCGGAGGAAGAAAGGTATCATCAAGAAGGTGAGAGAACTCACTATTCTTTGTGGTATTCCAGCATGTGCTATAATTTCCGATCCTTTTGATTCTAAAACAGAGGTGTGGCCAAATCTAAAGGAAGCCAAACAGATGATTGAGAGGTATCAGAGCTCATATATGAAAGATGGAAGAAAAAATGTGAACCAAGAAAGTTTTCTTTTGCAAAAGATTACTAAAGCAAGGGAGCAACTGAGAATGCAAAGACACGACAATCATGAGAATGAGTTGAACATTCTTATGATTTGGTACCTACAAAACAACAAGCTTCCAGATGATGTGACAGTTTCTGATTTGAAAGACTTGGATAAGTTGATTGAAAAAAATCTGAAGGAAATTGATGACAAGATGGCTTCACTTAGTTTATCAAACTAA 480 0.3688 MARKKVKLAFISNDSTRKATYKRRKKGIIKKVRELTILCGIPACAIISDPFDSKTEVWPNLKEAKQMIERYQSSYMKDGRKNVNQESFLLQKITKAREQLRMQRHDNHENELNILMIWYLQNNKLPDDVTVSDLKDLDKLIEKNLKEIDDKMASLSLSN* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0787 159 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr4g0787 159 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr4g0787 159 SUPERFAMILY SRF-like 1 79 IPR036879 GO:0003677|GO:0046983
Mtr4g0787 159 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr4g0787 159 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Mtr4g0787 159 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Mtr4g0787 159 PANTHER MADS BOX PROTEIN 2 155 - -
Mtr4g0787 159 Gene3D - 13 112 IPR036879 GO:0003677|GO:0046983
Mtr4g0787 159 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0787 Mtr-Chr4 10166670 10167149 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0787 1 152 Type I MADS-box Gene Family AT5G48670 47.059 6.92e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr4g0787 SRF-TF 5.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0787 - - gmx:100792290 183.341