Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0782 ATGATGGAGAAACACAAGTGCAAATTTTGTATGAGAAGCTTTTCTAATGGTAGAGCTTTAGGTGGACACATGAGATCACACATGATGAACCTACCAAAACAAACTGAGTCACCAACACCACCGCCGCCCCGAGCACCAACTGTTCAGCTCAGTTTTGAAGCTGAATCAGCTTCTTCTCTTTCATCCTATGGTCTAAGAGAGAATCCAAAGCGAAGCTTTCGATTCACAGATCCCAATCAATTTATAGATGCTGGTTCAATAATTCTTCAGGAAGATAGAGGAAGTGAAACTGAGTCGTCAAAGAATCCAACTGGACCACGATCCAAACGGGTCAAGAAAGATAATGATCCGGTGAAAAACTCAGTACAGAACGAGTCTTTTTCTGTACTGAGTTCTTCATCGGATATAACAACTGAAGAAGAAGTAGCTTTTTTTCTCATATCATTGTCTCGCGAAGATAACAACATATGGAAAACTCATACACAACGTCATGATCAACAGCATCAAGATGATCAGTATGAACAACAACAAGTCGAAGAAGATGAAGACCAAGAAGAAGACGAAGATGTCGAGGAAGAAGAAGAAGAAGAAGAAAGTGAAGCTGAATCTGAAGAAGAAGAAGAAGAACTGAAACCGTTGAAGAAGGTACGAGGAAGATACAAATGCGACACGTGTAACAAAGTGTTTCGTTCATATCAAGCACTAGGTGGACACAGAGCGAGTCACAAGAAAAATAAACAAGTTGCAGAAAGTGGTGGTGATTATTCAATTTCACAACATCATGAAAAAATTAACATTGAAAAAAATATCAATGTTAGTGAAAAGAAAATTCATGAATGTCCAATTTGTTTTAGAGAATTTGCTTCAGGTCAAGCACTAGGTGGACATAGGAGAACACATAATATTGGATTCGGATCAGCATCAGCATCAACATCAGCAGCAGCAATAACAACAATGGTTAGAAGGAACGTCAAGGTTGCTCGAGTTTCCGCGAATGTTGGAGATAGTTTGTTAGATCTAAATTTTCCTGCTCCGATGGACGAAGATGAAGATGAACATGAAGACAATGGTGATGACGATGTTAGTCAAGTTGAAGGTTCTGCTGTTTCCGATGCTGAATTTGTCAAACCTCATTAA 1137 0.3914 MMEKHKCKFCMRSFSNGRALGGHMRSHMMNLPKQTESPTPPPPRAPTVQLSFEAESASSLSSYGLRENPKRSFRFTDPNQFIDAGSIILQEDRGSETESSKNPTGPRSKRVKKDNDPVKNSVQNESFSVLSSSSDITTEEEVAFFLISLSREDNNIWKTHTQRHDQQHQDDQYEQQQVEEDEDQEEDEDVEEEEEEEESEAESEEEEEELKPLKKVRGRYKCDTCNKVFRSYQALGGHRASHKKNKQVAESGGDYSISQHHEKINIEKNINVSEKKIHECPICFREFASGQALGGHRRTHNIGFGSASASTSAAAITTMVRRNVKVARVSANVGDSLLDLNFPAPMDEDEDEHEDNGDDDVSQVEGSAVSDAEFVKPH* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0782 378 SMART c2h2final6 5 27 IPR013087 -
Mtr4g0782 378 SMART c2h2final6 220 242 IPR013087 -
Mtr4g0782 378 SMART c2h2final6 278 300 IPR013087 -
Mtr4g0782 378 MobiDBLite consensus disorder prediction 236 256 - -
Mtr4g0782 378 MobiDBLite consensus disorder prediction 120 134 - -
Mtr4g0782 378 MobiDBLite consensus disorder prediction 30 53 - -
Mtr4g0782 378 MobiDBLite consensus disorder prediction 344 361 - -
Mtr4g0782 378 MobiDBLite consensus disorder prediction 94 119 - -
Mtr4g0782 378 MobiDBLite consensus disorder prediction 160 174 - -
Mtr4g0782 378 Gene3D Classic Zinc Finger 217 300 - -
Mtr4g0782 378 SUPERFAMILY beta-beta-alpha zinc fingers 4 32 IPR036236 -
Mtr4g0782 378 MobiDBLite consensus disorder prediction 339 378 - -
Mtr4g0782 378 SUPERFAMILY beta-beta-alpha zinc fingers 219 300 IPR036236 -
Mtr4g0782 378 ProSiteProfiles Zinc finger C2H2 type domain profile. 220 247 IPR013087 -
Mtr4g0782 378 ProSiteProfiles Zinc finger C2H2 type domain profile. 278 300 IPR013087 -
Mtr4g0782 378 ProSitePatterns Zinc finger C2H2 type domain signature. 7 27 IPR013087 -
Mtr4g0782 378 ProSiteProfiles Zinc finger C2H2 type domain profile. 5 32 IPR013087 -
Mtr4g0782 378 ProSitePatterns Zinc finger C2H2 type domain signature. 280 300 IPR013087 -
Mtr4g0782 378 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 2 376 IPR044303 GO:0006355
Mtr4g0782 378 Coils Coil 173 211 - -
Mtr4g0782 378 MobiDBLite consensus disorder prediction 160 212 - -
Mtr4g0782 378 PANTHER CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR 2 376 - -
Mtr4g0782 378 MobiDBLite consensus disorder prediction 87 134 - -
Mtr4g0782 378 MobiDBLite consensus disorder prediction 175 207 - -
Mtr4g0782 378 ProSitePatterns Zinc finger C2H2 type domain signature. 222 242 IPR013087 -
Mtr4g0782 378 Pfam C2H2-type zinc finger 278 300 - -
Mtr4g0782 378 Pfam C2H2-type zinc finger 5 28 - -
Mtr4g0782 378 Pfam C2H2-type zinc finger 219 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0782 Mtr-Chr4 10119464 10120971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0782 2 350 C2H2 Transcription Factor Family AT2G45120 39.617 3.41e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr4g0782 zf-C2H2_6 6.3e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0782 - - gmx:100780611 280.026