Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0626 ATGGAAGAAGAAAACAACGTATTCAAAGATGAACAAGAACAAGAAATCAATGAATCCTTTGTTTGCTGCGTTTGCTTGGATCTGTTATACAAGCCCATTGTGCTATCTTGTGGCCACATATCATGTTTCTGGTGTGTCCATAAATCAATGAATGCATCACGCGAATCCCATTGTCCAACTTGTAGGCATCCATACTACCACTTTCCAACAATCTGTGAAATGTTTCACTTTTTGCTTCTTAAGACATATCCTGAAGCTTACAAGAGAAGGGAAAATCAGACTCTGGAGGAAGAAAAGGAAACGGGTCACTCCTCCCCTCAAGTTATATGTGATCCTCCTGGGGATTCGCTTACCGGTACTACCATAAATCAGACGTCTAACTCAGGCAGCACATTATCTTTTGAAAGTATGGAGCAATCAGGGTCTGCAAATCATAAAGGAGACGAAGGCATCATTTTGGAATACTCTTCTGACAGGAAACATGGAACAATATTGCCTCAAAATGGGCACATTCAGCAACCAAAAATATTAGTTGCAGATTTAATGTGCCCAACGTGCAAGCAACTTCTCATTCATCCTGTTGCTCTTAATTGTGGTCATGTATACTGTGAGACTTGTATCACCGACTTATCTCATGAGATGTTTAGATGTCAAGTTTGTCAAAGTCCACATCCCGAAGGATTTCCAAAAGTTTGTTTGGCTCTTGACCAGTATTTAGAAGAGCAATTTCCAGAAGAGTACACACAGAGAAGAGATGCAATTCAACTTGGTCAAATCAAAGTCCAACCTGAGACCACATCTTCTTGTTCATTATCTACCGACAACAGAGAAAGGATAGCTTGGGGTTCTAATCCTGAATTGTTGATTCACCCAGGAGTTGGTTGTGATTTTTGCGGGTTGTACCCAATAATTGGGGACAGATATAAATGTGTTGACTGTGAAGAGAGTATCGGCTTTGATCTTTGTGGTGATTGCTATAACAAACGTTCAAAGCGTCCGGGCCGATTTAATCAGAAGCACACCCTTGACCACACACTCATGCTTGTACAATATCGGAGGATGCTAATTAGCCGTGGACAAGATTCTTCAGATTTAATAGTTATACCGGATGATCCTGATTCCTCCTCTGATGAGGAATAA 1140 0.4079 MEEENNVFKDEQEQEINESFVCCVCLDLLYKPIVLSCGHISCFWCVHKSMNASRESHCPTCRHPYYHFPTICEMFHFLLLKTYPEAYKRRENQTLEEEKETGHSSPQVICDPPGDSLTGTTINQTSNSGSTLSFESMEQSGSANHKGDEGIILEYSSDRKHGTILPQNGHIQQPKILVADLMCPTCKQLLIHPVALNCGHVYCETCITDLSHEMFRCQVCQSPHPEGFPKVCLALDQYLEEQFPEEYTQRRDAIQLGQIKVQPETTSSCSLSTDNRERIAWGSNPELLIHPGVGCDFCGLYPIIGDRYKCVDCEESIGFDLCGDCYNKRSKRPGRFNQKHTLDHTLMLVQYRRMLISRGQDSSDLIVIPDDPDSSSDEE* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0626 379 Pfam Zinc finger, C3HC4 type (RING finger) 21 65 - -
Mtr4g0626 379 Pfam RING-type zinc-finger 183 217 IPR027370 -
Mtr4g0626 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 172 268 IPR013083 -
Mtr4g0626 379 CDD RING-HC 22 61 - -
Mtr4g0626 379 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRT1-LIKE 161 361 - -
Mtr4g0626 379 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRT1-LIKE 9 136 - -
Mtr4g0626 379 ProSitePatterns Zinc finger RING-type signature. 198 207 IPR017907 -
Mtr4g0626 379 Pfam Zinc finger, ZZ type 290 331 IPR000433 GO:0008270
Mtr4g0626 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 117 IPR013083 -
Mtr4g0626 379 SMART ring_2 22 61 IPR001841 -
Mtr4g0626 379 SMART ring_2 183 220 IPR001841 -
Mtr4g0626 379 SUPERFAMILY RING/U-box 11 73 - -
Mtr4g0626 379 ProSiteProfiles Zinc finger ZZ-type profile. 290 354 IPR000433 GO:0008270
Mtr4g0626 379 SUPERFAMILY RING/U-box 176 243 - -
Mtr4g0626 379 ProSiteProfiles Zinc finger RING-type profile. 183 221 IPR001841 -
Mtr4g0626 379 SMART zz_5 289 335 IPR000433 GO:0008270
Mtr4g0626 379 SUPERFAMILY RING/U-box 283 349 - -
Mtr4g0626 379 Gene3D - 284 350 IPR043145 -
Mtr4g0626 379 PANTHER UNCHARACTERIZED 9 136 - -
Mtr4g0626 379 PANTHER UNCHARACTERIZED 161 361 - -
Mtr4g0626 379 ProSiteProfiles Zinc finger RING-type profile. 22 62 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0626 Mtr-Chr4 7879850 7886590 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0626 11 62 C3H Transcription Factor Family AT1G74990 37.736 2.60e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0626 - - mtr:MTR_4g022320 772.696