Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0618 ATGGCCCGTTTCGTTGACAACCCATCATTCCCTGCTGGTCTAAGGGTTATTGCCATTGATCATGACATCATTGTTCTTAACACTATTGAGGATATGTGTAATCGATATCATTATCAAGTTACCAAATGCAATTCAGCTTCTGATGCTTTGTACTTGTTGGAAAGAAAGGACTGTTATGATGTAATGTTGATTGATGCTCATATGCCGAACATGGATGTCTATGACTTTGTCCAAAATGCTACCCTACAACTCAACATTCCTGTTATTATGATGGCTGTTGATTCCACAAAAAGTTCTATTATGAAGTCTATTGAATCTGGGGCTTGCACATATTGGACTAAGCCTTTGGCTGAAGAAGAGGTCAAGATCATGTGGCAACATGTTGTAAGAAACGGTTCGACTGAAAATAAATATGAAATTGTTGGAAGCTTGGTGGTTCAAGAATGTAGAAAACGGGGTAGAGAAGATGCTAATGCCTCAAAAGAAACACTTGCAAAGAAGACCTGTTTGTCTTGGTCGCCAGAACTGCATCAGCAGTTTCTATGTGCAGTCAATCAACTAGGCCTTGATAAAGCAAGACCCAAAATGATTCTCAAAATTATGGATGTTCCTGGTTTGAGAGTAGGACATGTTGCTAGTCATTTACAGAAATATAGGATTCATTTGAAAAGATCGGCTGATGAAACAAAACGTGGGAGGACAAAATCAAAGTGGAGTGATAGCTTTCAAGCCGAGTGGATCGACAAGGTTCATAGTTATGACTTTCAAACTAAGTCGATCGATCAAGACCGGAATGATAACCTAATTCAAACTGAGCTGGCTGATCAAGACCGGAATGACGACTTTCTAGCTGAGTGGATTGACTGCGGGACGGGATCCTACCTTCACAATCTCATGGCCTAA 903 0.4031 MARFVDNPSFPAGLRVIAIDHDIIVLNTIEDMCNRYHYQVTKCNSASDALYLLERKDCYDVMLIDAHMPNMDVYDFVQNATLQLNIPVIMMAVDSTKSSIMKSIESGACTYWTKPLAEEEVKIMWQHVVRNGSTENKYEIVGSLVVQECRKRGREDANASKETLAKKTCLSWSPELHQQFLCAVNQLGLDKARPKMILKIMDVPGLRVGHVASHLQKYRIHLKRSADETKRGRTKSKWSDSFQAEWIDKVHSYDFQTKSIDQDRNDNLIQTELADQDRNDDFLAEWIDCGTGSYLHNLMA* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0618 300 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 243 IPR045279 GO:0009736
Mtr4g0618 300 Gene3D - 163 225 - -
Mtr4g0618 300 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 169 221 IPR006447 GO:0003677
Mtr4g0618 300 Pfam Myb-like DNA-binding domain 171 219 IPR001005 -
Mtr4g0618 300 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 11 243 - -
Mtr4g0618 300 SUPERFAMILY Homeodomain-like 165 224 IPR009057 -
Mtr4g0618 300 SMART REC_2 14 125 IPR001789 GO:0000160
Mtr4g0618 300 Pfam Response regulator receiver domain 16 122 IPR001789 GO:0000160
Mtr4g0618 300 Gene3D - 14 141 - -
Mtr4g0618 300 SUPERFAMILY CheY-like 13 138 IPR011006 -
Mtr4g0618 300 CDD REC_typeB_ARR-like 16 129 - -
Mtr4g0618 300 ProSiteProfiles Response regulatory domain profile. 15 129 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0618 Mtr-Chr4 7813338 7814723 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0618 10 229 Response Regulator Gene Family AT4G31920 36.910 8.65e-44 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Mtr4g0618 Response_reg 3e-13 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0618 - K14491 mtr:MTR_4g021790 451.825