Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0617 ATGGCGGTTTTCACTGACAACCCATCATTCCCAGCCGGTCTCAAGGTTATTGCAATTGATCATGACATCACTTTCCTCAACTCTATTGAGGAGATGTGTAATCGATATCATTACCAAGTTACCAAATGCAATACAGCTTCTGATGCCTTGAATTCGATGGAAAGAAAGGACTGTTTTGATGTAATGTTGATTGATGCTCATATGCCAAACATGGATGTTTATGACTTTGTCCAACATGTTACCCTACTACTCAAAATTCCTGTCATTATGATGGCTGTTGATTCCACAAAAAGTTCTATTATGAAGTCTATTGAATGTGGGGCTTGCACATATTGGACTAAGCCTTTGGCTGAAGAAGAGGTCAAGATAATGTGGCAACATGTTGTAAGAAACGGTTCGACTGAAAATAAAGAATATGAAATTGTTGGAAGCTTGGTGGTTCAAGAATGTAGAAAACGGGGTAGAGAAGATGCTGATGCCTCAAAAGAAACACTTGCAAAGAAGGCCCGTTTGTCTTGGTCGCCAGAACTGCATCAGCGGTTTCTATATGCTGTCAATCAACTAGGCCTTGATAGGGCAACGCCAAAAAAGATTCAGAAAATCATGGATGTTCCCGATGTTACAAAACAACATGTTGCTAGCCATTTACAGAAGTATAGAAATTATTTAAAGAGCTCAACTGAAGATACAAAAGGTAGGATGAAAAAATCAAAGAAGAGTCCTTTTGAGACAAAATTTAGCTTAGAAGCTACTCACTCACTGCCGGAGCAGGACCAGAGTTTTCTCCTGAATTCAGCCACACAATGTCGCGACAATTGCGATGCACAACAGCATTGGATGGAAATTGGTGAATCCGACATTATGAGCAACACTTTTTCTGACTTGCCCAACTTGTTCCCATATGTTGATGATGATTTATCATCACTAGTGTGGTGA 936 0.3985 MAVFTDNPSFPAGLKVIAIDHDITFLNSIEEMCNRYHYQVTKCNTASDALNSMERKDCFDVMLIDAHMPNMDVYDFVQHVTLLLKIPVIMMAVDSTKSSIMKSIECGACTYWTKPLAEEEVKIMWQHVVRNGSTENKEYEIVGSLVVQECRKRGREDADASKETLAKKARLSWSPELHQRFLYAVNQLGLDRATPKKIQKIMDVPDVTKQHVASHLQKYRNYLKSSTEDTKGRMKKSKKSPFETKFSLEATHSLPEQDQSFLLNSATQCRDNCDAQQHWMEIGESDIMSNTFSDLPNLFPYVDDDLSSLVW* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0617 311 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 11 284 - -
Mtr4g0617 311 Pfam Response regulator receiver domain 16 122 IPR001789 GO:0000160
Mtr4g0617 311 SMART REC_2 14 125 IPR001789 GO:0000160
Mtr4g0617 311 SUPERFAMILY Homeodomain-like 166 225 IPR009057 -
Mtr4g0617 311 Pfam Myb-like DNA-binding domain 171 220 IPR001005 -
Mtr4g0617 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 165 224 IPR017930 -
Mtr4g0617 311 ProSiteProfiles Response regulatory domain profile. 15 129 IPR001789 GO:0000160
Mtr4g0617 311 SUPERFAMILY CheY-like 13 148 IPR011006 -
Mtr4g0617 311 Gene3D - 164 225 - -
Mtr4g0617 311 Gene3D - 14 142 - -
Mtr4g0617 311 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 168 221 IPR006447 GO:0003677
Mtr4g0617 311 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 284 IPR045279 GO:0009736
Mtr4g0617 311 CDD REC_typeB_ARR-like 16 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0617 Mtr-Chr4 7806345 7807945 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0617 10 246 Response Regulator Gene Family AT4G31920 35.743 3.12e-46 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Mtr4g0617 Response_reg 2.3e-13 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0617 - K14491 mtr:MTR_4g021760 527.709