Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0608 ATGGCCCTTTTCACCGACAAACCTGCATCATTCCCAGAAGGTCTCAAGGTTCTTGCAATTGATCATGACATCACTCTCCTGAATTCCATCGAGGAGATGTGTAATCGATGCAATTATAAGGTTACCAAATGTAGCATGGCTTCTGATGCCTTCAACATGTTGGAAAGAAAGGACTGTTTCGATGTAATGTTGATTGATCCTCATATGCCAAACATGGATGCTTATGACTTTGTCCAAAGTGTTGTCCTACAACTCAACATTCCTGTCATTATGATGGCCGTTGATTCCGCAGAAAGTTCTATTATGAAGTCTATTCAATGTGGGGCTTGCGAATGTTGGACTAAGCCTTTGGTTGAAAAACAGTTCAAGACCATGTGGCAACATGTTATAAGAAAAGGTTTGACTGCAAACAAAGAATATGAAATTGTTGGAAGCTCGGTGGTTCAAGAAATTAGAAAACGGGGTAGAGAAGATGATAATGCCTCAAAAGAAACACAGGCAAAGAAGGCCCGTTTGTCTTGGTCGCCAGAATTGCATCAACGATTTCTATGGGCTGTCAATCAACTAGGCCTTGATAGGGCAATGCCAAAAAAGATTCTGAAAATCATGGATGTTCCCAATATGACAAAAGAACAGGTTGCCAGCCATTTACAGAAGTATAGAAATTATTTAAAGAGCTCAACTGAAGATACAAAAGGTAGGATGAAAAAATTAAAGAAGAGTCCTTTTGAGACAAAATTTAGCTTAGAAGCTACTCACTCACTGCCGGAGCAGGACCAGAGTTTTCTCCTGAATTCAGCCACACAATGTCGCGACAATTGCGATGCACAACAACATTGGGTGGAAATTGGTGAATCCAACATTACTAGCAACATTTTTTCAGACTTGCCCAACTTGTTTCCATATGTTGATGATGATTTATCATCACTAGTGTGGTGA 939 0.4004 MALFTDKPASFPEGLKVLAIDHDITLLNSIEEMCNRCNYKVTKCSMASDAFNMLERKDCFDVMLIDPHMPNMDAYDFVQSVVLQLNIPVIMMAVDSAESSIMKSIQCGACECWTKPLVEKQFKTMWQHVIRKGLTANKEYEIVGSSVVQEIRKRGREDDNASKETQAKKARLSWSPELHQRFLWAVNQLGLDRAMPKKILKIMDVPNMTKEQVASHLQKYRNYLKSSTEDTKGRMKKLKKSPFETKFSLEATHSLPEQDQSFLLNSATQCRDNCDAQQHWVEIGESNITSNIFSDLPNLFPYVDDDLSSLVW* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0608 312 CDD REC_typeB_ARR-like 17 130 - -
Mtr4g0608 312 Gene3D - 165 226 - -
Mtr4g0608 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 166 225 IPR017930 -
Mtr4g0608 312 ProSiteProfiles Response regulatory domain profile. 16 130 IPR001789 GO:0000160
Mtr4g0608 312 Pfam Myb-like DNA-binding domain 172 221 IPR001005 -
Mtr4g0608 312 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 11 288 - -
Mtr4g0608 312 SMART REC_2 15 126 IPR001789 GO:0000160
Mtr4g0608 312 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 288 IPR045279 GO:0009736
Mtr4g0608 312 SUPERFAMILY Homeodomain-like 167 226 IPR009057 -
Mtr4g0608 312 SUPERFAMILY CheY-like 13 142 IPR011006 -
Mtr4g0608 312 Pfam Response regulator receiver domain 17 124 IPR001789 GO:0000160
Mtr4g0608 312 Gene3D - 10 137 - -
Mtr4g0608 312 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 169 222 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0608 Mtr-Chr4 7711041 7712605 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0608 11 231 Response Regulator Gene Family AT4G31920 38.136 4.69e-48 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Mtr4g0608 Response_reg 1.4e-12 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0608 - K14491 mtr:MTR_4g021760 627.861