Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0571 ATGATGGTGTCTTATCCCTCAAACGGAGGTTTGAAGAGAGGTATGTTTGGAGGGGCCTTTCATGATTTTGTGGAAAGAATCAGTAAAGATGAAGACAAGTTCATGGGTTGGGTGGCAGAGATCAGTAAAGCTTACAAATATTCGGGACCAAAATATTTATTAGTCAAAGACTTGTACAGCGAAGAAATTCAACACATTAAGAATGTAGTTGACCGTGTTATTTGTGTGCTAAATAAGAGGATAAACTTATCATGTGCTTTCTATACAGAGAGTCTAAAATCTAGTTTGCAAGATGTGATTCAACAATTGAAACAATCAAAATGTCCTCTCCTACTAGGGATATGGGGGATGACAGGGATTGGTAAATCAGCCATTGCCGAGGCCATTTATGATCAGATTAGTCCTTATTTTGAAGACAAATGTTTTCTAGATAATGTCAGGGTAGTTTGGGAAACAAATAATGGTCCAGTTTCTTTACAAGCGAAACTTCTTTTAGATGTCGACAAAGCAACTAAAACAAAGATTCCTACAATTGAATTGGGAAAAGAGATTTTAAAAGAAAGATTTCGACATAAAAGGGTACTTCTTGTACTTGACGATGTTAATAAATTGGAGCAGCTAAACGCTTTGTGCGGAAGTCGTGAATGGTTTGGCACCGGTAGCAAAATAATCATCACAACAAGAGATAGACATCTACTCAAGGAGCATGGAGTGGACCATATATATAGGGTGAAAGAACTTGACAACACTGAGTCACTTGAGGTTTTGAACCGGGGTGCATTCAGCCAGGCTACAATTACTCCAGAAGATTTTGTTGAACTTTGCAGAGAGGTAATTTCATATTCTGGGGGATTGCCTCTTGCTCTTCAAAATCTTCGGACAATTTTGCATGGAAAAGAAGCACGTCAGTGGATGGATATGTTGAGGAGTCTGGAAAGATTGTCCATTCCATTTCCACAACTACTTGAAGCTCTAGAGAAGAGTTTTCATGATTTGAGTGATGAAGAAAAACATATATTCCTTGATATAGCATGTTTCTTTAAAGGGATGGACCAAAATGTTGTACTCCATGCATTAAATAGGCAAATACAATGCGCAAGTTTTCAAATAAGTCTCCTTGAAGACAAGAGCCTTGTAGCCATTGATAAGAATAACAAGCTTGAAATACATGTTCTGCTACAAGCCATGGCAAGAGATATCATTAAGAGGGAATCAAGTAATATGTCTAATCAGCCGAAGATGTACGATGTGATCTTGAGTTTTAGAGGGGATGACAGTCGTGCGAAATTCATTTCCCATTTGTATTCCTCTCTTCAAAATGCGGGGATTTATGCTTTCAGAGATGCTGAGATTCAACGAGGAGATCATATCTCAATCTCTGTTGAAAGCAATTGGATGGTCTAG 1404 0.3811 MMVSYPSNGGLKRGMFGGAFHDFVERISKDEDKFMGWVAEISKAYKYSGPKYLLVKDLYSEEIQHIKNVVDRVICVLNKRINLSCAFYTESLKSSLQDVIQQLKQSKCPLLLGIWGMTGIGKSAIAEAIYDQISPYFEDKCFLDNVRVVWETNNGPVSLQAKLLLDVDKATKTKIPTIELGKEILKERFRHKRVLLVLDDVNKLEQLNALCGSREWFGTGSKIIITTRDRHLLKEHGVDHIYRVKELDNTESLEVLNRGAFSQATITPEDFVELCREVISYSGGLPLALQNLRTILHGKEARQWMDMLRSLERLSIPFPQLLEALEKSFHDLSDEEKHIFLDIACFFKGMDQNVVLHALNRQIQCASFQISLLEDKSLVAIDKNNKLEIHVLLQAMARDIIKRESSNMSNQPKMYDVILSFRGDDSRAKFISHLYSSLQNAGIYAFRDAEIQRGDHISISVESNWMV* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0571 467 SUPERFAMILY "Winged helix" DNA-binding domain 322 405 IPR036390 -
Mtr4g0571 467 Gene3D - 67 240 IPR027417 -
Mtr4g0571 467 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 423 462 IPR044974 GO:0006952
Mtr4g0571 467 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 404 IPR044974 GO:0006952
Mtr4g0571 467 ProSiteProfiles TIR domain profile. 413 467 IPR000157 GO:0007165
Mtr4g0571 467 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 423 462 - -
Mtr4g0571 467 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 11 404 - -
Mtr4g0571 467 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 343 IPR027417 -
Mtr4g0571 467 Pfam NB-ARC domain 94 313 IPR002182 GO:0043531
Mtr4g0571 467 Gene3D - 246 333 IPR042197 -
Mtr4g0571 467 SUPERFAMILY Toll/Interleukin receptor TIR domain 405 458 IPR035897 -
Mtr4g0571 467 Pfam TIR domain 415 463 IPR000157 GO:0007165
Mtr4g0571 467 SMART AAA_5 108 247 IPR003593 -
Mtr4g0571 467 Gene3D - 412 465 IPR035897 -
Mtr4g0571 467 PRINTS Disease resistance protein signature 111 126 - -
Mtr4g0571 467 PRINTS Disease resistance protein signature 188 202 - -
Mtr4g0571 467 PRINTS Disease resistance protein signature 282 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0571 Mtr-Chr4 7303637 7305930 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0571 31 435 WRKY Transcription Factor Family AT4G12020 31.051 1.07e-43 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0571 - - mtr:MTR_4g021095 928.317