Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0563 ATGTTTTCTTTCACTTCCAACTCAAAAAGGCACCTCAAACTTAAATCCACACCTTCTATTAGAACTCCTACTAATCCAAAGAGGGCGAGGTACGATGTGTACTTGAGTTTCTGCGACCAAGACAAAGACCTGCATTCTTTTGTTTTCAGTATCTATAATGCTCTTAGTAGAAAAGCTGGAGTTGATGTTTTCTGGGAGAATGAGAGGGATGGCTATGGAGATCGAGAAAAACCAACCTCTGTGCTCAATGTTATAAGAGATTGCAAAGTTTTTGTAATTGTATTTTCAAGAGACTATTTCAATTCAAGGTCGTGTCTTCATGAATTTAAAAAAATAACTGAGTGTTGCCGAACCAAAGATGATCTTATGGTTCTACCTGTGTTCTATGATGGTGTTGATCTCTCGTTCGGAAGTTGGGAAAGAGGTATGTTTGGAGGAGAGACTTTTCATGATTGCGTGGATAAAATCTTGATGAAGAAAACCTCTAAAGAGGAAGATAAGTTCATGACTTGGGTGGCATCAATCAGCAAAGCTACCATATATACGGGACAAAGTGATCTCGAAGACAGGAACAGTAGTATATATATTGACGACGTAGTCGAATGTGTTACTAATGTGCTACGCCACTGGAAAGACTTCTCCCGTGCTTTCTGTCCAGTGAGCATAAAATCTGGTGTGCAAGATGTGATTCAACTATTGAAACAATCAAACTCTCCTCTTCTAATAGGGATATGGGGGATGGGAGGGATTGGTAAATCAACCATTGCCCAAGCTATTTATGATCAAGTTGGTCCCTATTTTGAACACAAGAGTTTGCTAAAAAACGTCAGGACATTTTGGCAACAAAATGGAGGTCAAGTTTCTTTACAAAAGAAACTTCTTATGGCTGTCAACAAAACAACTGAAAAAAAGATACTTCATATTGAATCAGGGAAAGTGATTTTAAAAGAAAGACTCCGTCATAAAAGTGTACTTCTTATACTTGACGATGTTAATAAATTGGAGCAGCTGAAGTCTTTGTGTGGAAATCGGGATTGGTTTGGTCCAGGTAGCAAAATAATCATTATCACCAGAGATAGACATCTACTTATGGAGCATGGAGTTGACCATATATATAAAGTGAAACAATTGGAAGAAAGTGAATCGATTGAGCTTTTTAATTGGGGTGCATTCAGCCAAGCAACAACTCCTCAAGGTTTTAGTGAACTTTCTAGGCAATTAGTTGCTTATTCTAAGGGATTGCCTCTTGCTCTTAAAGCCCTTGGGGAGTTTTTGCATGGAAAGGACGCACTTGAGTGGAAACGTGTGTTGAAGAGTCTTGAAAGATTTTCCTTTCCCGACCAAGAAGTACTGCAAGCTCTAGAGACGAGTTTTGATGATTTGAAGGATGAAGAAAAACATATATTCCTTGATATAGCATGTTTCTTTAACGGGATGGACCAAAATTATGTACTCCGTACAATAAATAGGTCAACACAATGCACCAGTCTTCAAATAAGTCTCCTTGAAGACAAGAGCCTTTTAACCATTGGTGAGAATAACAAGCTTGAAATGCATGGTCTGCTACAAGCGATGGCAAGGGATATCATTAAGAGAGAATCAAGTAATAAGACTGATCAGCCAAAGATGTACGATGTGTTCTTGAGTTTCAGAGGGGAAGACAGTCGTGCAAAGTTCATTTCACATCTCTATTCATCTCTTCAAAATGCCGGGATTTATGTTTTCAAAGACGACGATGAAATTCAACGAGGCGATCAGATCTCAATTTCACTATTGCGAGCAATCGGACACTCTAGAATTTTTATTGTGGTTTTATCTACAAACTATGCTAATTCAAGATGGTGTATGCTAGAGTTGGAGAAGATAATGGAAATTGGCAGAACCGGGGGTCTGGTGGTTGTACCAGTGTTCTATGAGGTAGATCCCTCAGAAGTACGTCGTCGGGAAGGTCAGTTTGGAAAAGCTTTTGAAAAACTTATACCAACAATCTCAGTGGATGAATCCACAAAGAGTAATTGGAAAAGAGAACTCTTCGATATTGGTAGCATAGCAGGTTTTGTACTCATAGATTCCAGGAATGAGAGTGCAGATATCAAGAATATTGTTAAACACGTGACCCGTTTGCTAGATAGGACAGAATTATTCGTTGCTGAACATCCAGTGGGTGTAGAATCTCGTGTGGATGCTGTGACTAAGCTACTCAATATCCAAAACTCCGAAGATGTTTTACTTTTAGGAATATGGGGAATGGGGGGTGTGGGTAAAACAACCATTGCCAAAGCGATTTATAATCAAATTGGGAGAAAATTCGATGGACGGAGCTTTCTTTTGAATATAAGAGAATTTTGCGAGACAGATGCCAATCATGTTTCTCTGCAACAACAAATACTCTGTGATGTTTACAAAACAACGGCATTCAAGATACGCGATATCGAATCAGGGAAAAATATATTGAAGGAAAGACTTGCCCAGAATAGGGTACTTCTTGTGCTTGATGATGTGAATGAATTGGACCAACTAAAGGCTTTGTGTGGAAGCCGTGAATGGTTTGGTCCGGGGAGTAGAATTATCATCACAACAAGGGATATGCATCTTCTTAGGTCGTCTAGAGTTGACCTAGTGTATACAATTGAAGAAATGGATGAGAGTGAATCTCTTGAGCTTTTCAGTTGGCATGCATTCAAGCAACCAAGTCCGGCAGAAGGTTTTGCTACACATTCAACAGATGTGATTGCTTATTCCGGGAGATTGCCACTAGCACTTGAAGTTCTTGGGTGCTATTTGTCTGACTGTGAAATAACAGAGTGGCAGAAAGTTTTGGAGAAACTCAAATGTATTCCCCATGATGAAGTACAGAAGAAGCTAAAAGTAAGCTTTGATGGTTTAAAAGATGTTACAGAGCAACAAATATTCCTTGATATAGCCTGTTTCTTGATTGGAATGGATAAAAATGATGCAATAAAAATATTAAATGGGTGTGGGTTTTTTGCGGATATTGGAATTAAAGTCCTTGTAGAGCGAAGCCTTGTAACTGTTGACAATAGGAACAAGCTTAGAATGCATGACTTGTTGAGAGATATGGGAAGGCAAATAATCTATGAAGAATCACCATTTGATCCTGAGAACCGCAGTAGGTTGTGGCGCCGTGAGGAAGTGTATGATGTATTATTAAAGCAGAAGGGAACAGAAGCTGTCAAGGGACTGGCTTTGGTGTTTCCAAGAAAAAATAAAGTTTGTCTGAATACCAAAGCATTTAAGAAGATGAATAAACTCAGATTGCTTCAACTTTCCGGGGTTCAGCTTAATGGAGATTTTAAATACCTTTCAGGAGAACTTAGGTGGCTTTACTGGCATGGATTTCCATTAACTTACACTCCTGCAGAATTTCAACAAGGAAGTCTAATTGTCATCCAATTAAAATATAGCAATCTCAAACAGATATGGAAGGAGGGCCAGATGCTAAAGAATCTAAAAATTCTTAATCTTAGTCATTCTTTGGATTTGACTGAAACCCCAGATTTTTCATACATGCCTAATCTCGAAAAGCTAGTGCTCAAAGACTGTCCAAGTTTGTCTACAGTCTCCCATAGCATTGGATCTCTCCATAAACTTCTCCTTATAAATTTGACAGACTGCATACGTCTTCGTAAACTTCCAAGAAGCATCTATAAATTAAAATCTCTAGAAACTTTAATTCTTTCAGGATGTTCCATGATTGACAAATTGGAGGAGGACTTGGAACAGATGGAATCATTGACAACCTTGATTGCGGATAAGACTGCTATAACAAAAGTTCCCTTTTCAATAGTACGATCTAAAAACATTGGATATATTTCTTTATGTGGATTTGAAGGATTTTCACGGGATGTGTTTCCTTCACTTATTCGCTCTTGGATGTCACCATCTTATAATGAGATATCACTAGTTCAAACATCTGCATCCATGCCATCTCTTAGTACTTTCAAGGACCTTCTAAAGCTTCGAAGTCTTTGTGTGGAATGTGGCTCAGATCTACAGCTAATTCAAAATGTAGCAAGAGTTTTGGAAGTATTAAAAGCCAAAAATTGTCAGAGATTGGAAGCAAGTGCAACTACATCACAGATCTCTGATATGTATGCTTCTCCTTTAATTGATGATTGCCTAGGTCAAGTTCGCCCTTCAGGGTCAAATAATTACTTGAAATCTGTCTTAATTCAAATGGGAACAAAACACCAAGTCCCGAGTCTTGCCAAAGATCGCATCTTACAGACTGCAAATGGGACTTGGGAGTCATTTTTGCACAATAGTTCTGAGTGGAAAACCTTTAGTTGCCAAGGATGTTCCATTATATTTGATATCCCAACAATGAAGGGGCGTAACCTGAAGAGTATGATGTTGTCCGTCATTTATTACTCTTCACAGGAGAACATAACATCAGAAGGTTGCCAAGGTGTGTTGATCATTAATCACACAAAGACAAACATTCAGGCCTATAAAAGAGATACATTAGCCTCCTTTGAGGATGAGGACTGGAAGAACTTAACATCAAGTCTAGAACCTGGTAACACAGTGGAGGTTATGGCTGTTTTTGCGGAGGGATTCAATGTAGAAAAAACAACAGTATCTCTCTTATATGATGAACCAATTGACAAAGAAATGGAACAGTGCAATGCAGGAGATGAGGAGGATATTACTGTTTCTGGAGATGTCAATAAGAATATTAATGTTGGTGATTATATTGATGTGCCAGTGAATAACAATATTAGTGGTCCTGGTGAAGATAAGCACTCACATGCAGTGAATACAAATTGTATTGTTTCTAGTGACGATGAGTCAACCGACAAAGAAACTGAACACTGCAATGGACGAGATGAGGCGGATGTTACTGTTTCTGAAGATGTCAATAAGAATGTTAATTTTATTGATGATGTTACAAATTGTATTGTTTCTAGTGATGATGAGTCAACCGACAAAGAAACCAAACACTGCAATGGAGGAGCTGAGGAGGATGTTACTGTTTCTGATGATGAGTATTTCGATGCGCCGTGGGATAATAATTTGATTGGTCCTGGTAAAGATAAACACTCACATGCAGTGAATAAAAATTCTACTGTTTCTAGTGATGATGCCCTGACAGCAAATCAGAATTATGCTGTCTCTTTTGGTGGTGATATTCCAGCAGATAAAAATGTTATTGTTTCTGGGGAAGATGAAAATGATCTTGGTTCTTTAAGAGAGGGAATCGATGGACGGAAAATGAAAAAAGATGAACATAGGCCACGAGTACATACCGAACATGGTAGACAAGGGTCTGATGTTTGA 5301 0.3848 MFSFTSNSKRHLKLKSTPSIRTPTNPKRARYDVYLSFCDQDKDLHSFVFSIYNALSRKAGVDVFWENERDGYGDREKPTSVLNVIRDCKVFVIVFSRDYFNSRSCLHEFKKITECCRTKDDLMVLPVFYDGVDLSFGSWERGMFGGETFHDCVDKILMKKTSKEEDKFMTWVASISKATIYTGQSDLEDRNSSIYIDDVVECVTNVLRHWKDFSRAFCPVSIKSGVQDVIQLLKQSNSPLLIGIWGMGGIGKSTIAQAIYDQVGPYFEHKSLLKNVRTFWQQNGGQVSLQKKLLMAVNKTTEKKILHIESGKVILKERLRHKSVLLILDDVNKLEQLKSLCGNRDWFGPGSKIIIITRDRHLLMEHGVDHIYKVKQLEESESIELFNWGAFSQATTPQGFSELSRQLVAYSKGLPLALKALGEFLHGKDALEWKRVLKSLERFSFPDQEVLQALETSFDDLKDEEKHIFLDIACFFNGMDQNYVLRTINRSTQCTSLQISLLEDKSLLTIGENNKLEMHGLLQAMARDIIKRESSNKTDQPKMYDVFLSFRGEDSRAKFISHLYSSLQNAGIYVFKDDDEIQRGDQISISLLRAIGHSRIFIVVLSTNYANSRWCMLELEKIMEIGRTGGLVVVPVFYEVDPSEVRRREGQFGKAFEKLIPTISVDESTKSNWKRELFDIGSIAGFVLIDSRNESADIKNIVKHVTRLLDRTELFVAEHPVGVESRVDAVTKLLNIQNSEDVLLLGIWGMGGVGKTTIAKAIYNQIGRKFDGRSFLLNIREFCETDANHVSLQQQILCDVYKTTAFKIRDIESGKNILKERLAQNRVLLVLDDVNELDQLKALCGSREWFGPGSRIIITTRDMHLLRSSRVDLVYTIEEMDESESLELFSWHAFKQPSPAEGFATHSTDVIAYSGRLPLALEVLGCYLSDCEITEWQKVLEKLKCIPHDEVQKKLKVSFDGLKDVTEQQIFLDIACFLIGMDKNDAIKILNGCGFFADIGIKVLVERSLVTVDNRNKLRMHDLLRDMGRQIIYEESPFDPENRSRLWRREEVYDVLLKQKGTEAVKGLALVFPRKNKVCLNTKAFKKMNKLRLLQLSGVQLNGDFKYLSGELRWLYWHGFPLTYTPAEFQQGSLIVIQLKYSNLKQIWKEGQMLKNLKILNLSHSLDLTETPDFSYMPNLEKLVLKDCPSLSTVSHSIGSLHKLLLINLTDCIRLRKLPRSIYKLKSLETLILSGCSMIDKLEEDLEQMESLTTLIADKTAITKVPFSIVRSKNIGYISLCGFEGFSRDVFPSLIRSWMSPSYNEISLVQTSASMPSLSTFKDLLKLRSLCVECGSDLQLIQNVARVLEVLKAKNCQRLEASATTSQISDMYASPLIDDCLGQVRPSGSNNYLKSVLIQMGTKHQVPSLAKDRILQTANGTWESFLHNSSEWKTFSCQGCSIIFDIPTMKGRNLKSMMLSVIYYSSQENITSEGCQGVLIINHTKTNIQAYKRDTLASFEDEDWKNLTSSLEPGNTVEVMAVFAEGFNVEKTTVSLLYDEPIDKEMEQCNAGDEEDITVSGDVNKNINVGDYIDVPVNNNISGPGEDKHSHAVNTNCIVSSDDESTDKETEHCNGRDEADVTVSEDVNKNVNFIDDVTNCIVSSDDESTDKETKHCNGGAEEDVTVSDDEYFDAPWDNNLIGPGKDKHSHAVNKNSTVSSDDALTANQNYAVSFGGDIPADKNVIVSGEDENDLGSLREGIDGRKMKKDEHRPRVHTEHGRQGSDV* 1767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0563 1766 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 207 472 IPR027417 -
Mtr4g0563 1766 CDD AAA 721 862 - -
Mtr4g0563 1766 PRINTS Disease resistance protein signature 744 759 - -
Mtr4g0563 1766 PRINTS Disease resistance protein signature 821 835 - -
Mtr4g0563 1766 PRINTS Disease resistance protein signature 914 928 - -
Mtr4g0563 1766 PRINTS Disease resistance protein signature 1223 1239 - -
Mtr4g0563 1766 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 40 536 - -
Mtr4g0563 1766 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 552 1537 - -
Mtr4g0563 1766 ProSiteProfiles TIR domain profile. 29 157 IPR000157 GO:0007165
Mtr4g0563 1766 Gene3D - 25 208 IPR035897 -
Mtr4g0563 1766 Gene3D - 536 707 IPR035897 -
Mtr4g0563 1766 SUPERFAMILY Toll/Interleukin receptor TIR domain 535 684 IPR035897 -
Mtr4g0563 1766 SUPERFAMILY "Winged helix" DNA-binding domain 449 534 IPR036390 -
Mtr4g0563 1766 Gene3D Ribonuclease Inhibitor 1218 1375 IPR032675 -
Mtr4g0563 1766 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 707 974 IPR027417 -
Mtr4g0563 1766 MobiDBLite consensus disorder prediction 1727 1766 - -
Mtr4g0563 1766 SMART AAA_5 741 879 IPR003593 -
Mtr4g0563 1766 SMART AAA_5 238 378 IPR003593 -
Mtr4g0563 1766 Gene3D Ribonuclease Inhibitor 1070 1217 IPR032675 -
Mtr4g0563 1766 SUPERFAMILY L domain-like 1019 1334 - -
Mtr4g0563 1766 Pfam NB-ARC domain 226 446 IPR002182 GO:0043531
Mtr4g0563 1766 Pfam NB-ARC domain 724 952 IPR002182 GO:0043531
Mtr4g0563 1766 Gene3D - 209 370 IPR027417 -
Mtr4g0563 1766 Gene3D - 708 874 IPR027417 -
Mtr4g0563 1766 ProSiteProfiles TIR domain profile. 542 709 IPR000157 GO:0007165
Mtr4g0563 1766 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 40 536 IPR044974 GO:0006952
Mtr4g0563 1766 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 552 1537 IPR044974 GO:0006952
Mtr4g0563 1766 SMART till_3 30 178 IPR000157 GO:0007165
Mtr4g0563 1766 SMART till_3 543 683 IPR000157 GO:0007165
Mtr4g0563 1766 Gene3D - 376 462 IPR042197 -
Mtr4g0563 1766 Gene3D - 879 963 IPR042197 -
Mtr4g0563 1766 Pfam TIR domain 544 706 IPR000157 GO:0007165
Mtr4g0563 1766 Pfam TIR domain 31 177 IPR000157 GO:0007165
Mtr4g0563 1766 SUPERFAMILY Toll/Interleukin receptor TIR domain 23 135 IPR035897 -
Mtr4g0563 1766 Coils Coil 1239 1259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0563 Mtr-Chr4 7110283 7120880 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0563 31 564 WRKY Transcription Factor Family AT4G12020 27.881 2.97e-43 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0563 - - cam:101511908 2367.04