Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0562 ATGTCTTCCTTCACTTCATCCTCCAAAATCTGCCAGGAATTTGAATCCATATTAACTACCGATCCAAAGAAGAGAAGGTACAACGTGTTCTTGAGTTTCTGCGCTCACGATAAGGGTTATTTTCTTTCGAGTCTCGAAGAGGCTCTTAGTTTAGAAGCTGGTATCAATGTTTTTGGGGACATTAAGAGGTTTCAGCATGTAGAGTCTGTGCTGAATGTAATTCAAGACTGCAAAGTCGCTGTAGTCTTGTTTTCAAAAAATTATACTAATTCAAGTTCGTGTATACAAGAATTGGAGAAAATAACTCAGTGTTGCCGAACCTCAGATTTGGTTGTTCTGCCTGTGTTCTATCAAGGTGTCGGTCCCTTCTATCATGGAGATATGTTTGGAGGAGACACTTTTCATGATTTTCTGGATAGAATATCAATGGAGGAAATCTCTAAAGAAGAAGACAAGCTCATGACCTGGGTAGCAGCGATCACTAAAGCTAACAAATATTTAGGATCACGTGATCTCATACCCAAACCCATATACAGGTACGAACATGTATCAATTACGGACTATATTAAGGATATAGTTGAACATATTACATGTGTGATAAACAAGAATAGAGATTTTTGTGCGAATTCCTGTACACCCAGTGTAAAATCTGGTGTGCAAGACGTGATTCAACTATTGAAACAATCAAAAAGTCCTCTCATAATAGGGATATGGGGGATGACAGGGATTGGTAAATCAACCATTGCCCAAGCCATTTACGATCAAATTGGTCTTTATTTTGAACACAAGAGTTTCCTTAAAGACCTTGGGGTACTTTGGGAAGAACAAAATCATGATCAAGTTTTATTCAAAGGTCATCAACATCATAGGGTACTTCTTGTACTTGATAATATTGATAAATTGGAGCAGTTGGATGTTTTGGGCCTACGAAGAAGTCGTAAATGGTTTGGTGAAGGTAGCAAAATAATCATCACAACAAGAGATAGACATCTACTCAAGAAGCATGGAATTGACCATATATATAGAGTGAAAGAATTGGATGAAAGTGAATCACTTAAAGTTTTTAATTTAGCTGCATTCAGCCAAGCAACAACTCCACAAGAAGATTTTAGTGAACTTTCTAGACAGCTAGTTGCTTATTCTAGGGGATTGCCTCTTGCTCTTAAAGAACTTGGGTTCTTTTTGAATGGAGAGGAAGCACTTAAGTGGAAGAATGTGTTGAAGAGTCTCAAAAGACTTTCCATTCCAGCTCCACGACTACAAGAAGCTCTTGAAAAGAGTTTTAGTGATTTGAGTGATGAAGAGAAACGAATATTCCTTGATATAGCATGTCTCTTTGTTGGGATGAACCTAAATGATGTAAAGCAAATATTAAATAGGTCAACACAATCTGCAGCTCTCGAGATAAGTAACCTTGAAGACAAGAGCTTTCTAACCATTGACGAGAATAACAAGCTTGGAATTCATGTTCTGCTACAAGCCATGGCGAGAGATATCATTAAAAGAAAATCAAGCAATAACACTGATCAGCCAAAGATGTATGATGTGTTCTTGAGTTTCAGAGGAGAAGACAATCGGGCAAAGTTCATGTCACATCTCTATTCCTCTCTTCAAAATGCGGGGATTTATGTTTTCAGAGACGATGACGAGATTCAACGAGGAGATCATATCTCAATCTCACTGTTGCGAGCAATTGAACAGTCTAGAACTTGTATCGTTGTTTTGTCTACAAATTATGCTAATTCAAGATGGTGTATGCTAGAGTTGGAGAAGATAATGGAAATTGGCAGAAACAGGGGTCTGGTCGTTGTGCCAGTATTTTATGAGGTAGCTCCATCAGAAGTACGCCATCAGGAAGGTCAGTTTGGGAAATCTTTTGATGATCTTATATCAAAAAATTCAGTAGATGAATCCACAAAGAGTAATTGGAAAAGAGAACTCTTTGATATTGGTGGAATAGCAGGGTTTGTCCTCATAGATTCCAGGAATGAAAGTGCTGATATCAAGAATATTGTTGAACACATCACCCGTTTGTTAGATAGGACAGAGTTATTCGTTGCTGAACATCCAGTGGGTGTAGAATCTCGTGTGGAAGCTGTGACTAAGCTACTAAACATCCAAAACTCAGATGATGTTTTAATTTTGGGGATATGGGGAATGGGGGGTATGGGGAAAACAACCCTTGCCAAAGCAATTTATAATCAAATTGGGAGCAAATTTGAGGGAAGGAGCTTTCTTCTGAATATAAGAGAGTTATGGGAGACAGATACTAATCAAGTTTCTCTACAGCAAAAGATACTTGATGATGTTTACAAAACATTGACATTCAAGATACGTGATCTAGAATCAGGCAAAAATATGTTGAAGGAAAAACTTTCCCAGAATAGGGTTCTTCTTGTGTTTGATGATGTGAATGAATTGGAGCAGCTAAAGGCTTTGTGTGGTAGCCGTGATTGGTTTGGTCCGGGGAGTAGAATAATAATCACAACAAGAGATATGCATCTTCTTAGATTGTGTGGAGTTTATCAAATGTATACAATAGAAGAAATGGACAAAATTGAATCACTTAAGCTGTTTAGTTGGCATGCATTCAAACAACCAAGTCCAAAAGAAGATTTTGCTACGCATTCAACAGATGTGATTGCTTATTCTGGGGGATTGCCACTAGCACTTGAAGTCCTTGGATCCTATTTGGCCGACTGTGAAATAACTGAGTGGCAATATGTTTTGGAGAAACTCAAATGCATTCCTCATGATCAAGTACAGGAGAAGCTAAAAGTAAGCTTCCATGGTTTAAAAGATTTTACAGAGAAACAAATATTCCTTGATATTGCTTGTTTCTTTATTGGGATGGACAAAAAGGATGTAATACAGATATTAAATGGTTGTGGGTTTTTTGCTGATATTGGGATTAAAGTTCTTGTTGAGCGAGCCCTTGTAACTGTTGACAATAGGAACAAGCTAAGAATGCATGATCTGTTAAGAGATATGGGAAGACAAATAATTTATGAGGAAGCACCATCAGATCCTGAGAAGCGCAGTAGGTTGTGGCGCCATGGGGAGGTGTTTGATATATTAGAAAAGCGTAAGGGAACAGAAGCTGTCAAGGGACTGGCTTTGGAGTTTCCAAGAAAAGATTGTTTGGAAACCAAAGCATTTAAGAAGATGAATAAACTCAGATTGCTTCGCCTTGCTGGGGTGAAGCTGAAGGGAGATTTTAAGTATCTTTCAGGAGATCTTAAGTGGCTGTATTGGCATGGATTTGCAGAACCCTGCTTTCCTGCAGAATTTCAGCAAGGAAGTCTAGTTTCCGTTGAATTAAAATATAGTAGGCTCAAACAATTATGGAACAAGTGCCAGATGCTTGAAAATCTAAAAATTCTTAATCTTAGTCATTCTCTAGATTTGACTGAAACCCCAGACTTTTCCTACTTACCTAATCTTGAAAAGCTTGTGCTAAAAAACTGTCCAAGTTTGTCCACGGTCTCCCATAGCATTGGATCTCTACATAAACTTATTTTGATAAATTTGAGAGGCTGCACAGGTCTTCGGAAACTCCCAAGAAGCATCTATAAATTAAAATCGTTAGAAACTTTGATTCTTTCTGGATGTTCTATGATTGAAAAACTGGAGGAGGACTTGGAACAGATGGAATCGTTGATTACCTTGATTGCCGATAAGACTGCCATCACAAAAGTGCCATTTTCAATAGTAAGGATGAAAAGCATTGGATATATTTCTTTTTGTGGCTTTGAAGGATTTTCACGTGATGTATTCCCTTCTCTCATTCGGTCTTGGATGTCGCCATCAAATAATGTGATATCCCTTGTTCAAACATCTGTGTCCATGTCATCACTTGGGACTTCCAAAGACCTTCAAAAACTTCGAATTCTTTGTGTGGAGTGTGGTTCAGATCTGCAACTAACTCAAGATATAGTAAGATTTCTGGGTGTACTAAAAGCCACAAGTTATCAGAAATTGGAAGCAAGTGCTATTTCAATTCCTTCAGAGATCTCTGATATGTATGCTTCTCCCTTAATTGATGATTTTCTAGGTAAAGTTTGCACTTCAGGGTCAATGAATCACTTGAAATCTCTCTTAATTCAAATGGGAACAAAATGCCAAGTCTCCGATATTGCTGTAGATGTTTTACAGACTGCAGATGAGACTTGGGATTCGTTTTTCCTCCCCTGTGACAATAATTCTGAATGGTCAAGCTTTAGTTGCAAAGGTTGTTCCATAATATTTGATATCCCAACAATAAAGGGACGAAACCTGAAGAGTATGATCTTGTTCGTTGTCTATTACTCTTCCTCGGAAAACATAACATCAGATAGTTGCCAAGGTGTGTTGATCATAAATTACACAAAAAGAACCATTCAGGTTTATAAAAGAGATACGCTAACCTCGTTTGAGGATGAGGATTGGCAGAGCATAACATCTAATCTAGAACCTGGTAACAAAGTGGAGGTAATGGTTGTATTTGGGGAGGGTTTCATTGTTGAGAAGACTACAATATCTCTCTTATATGATGAACCAGTCAACAAAGAAATGGAATGTTGTCATGTAGTAGACGTGGATGATGTTATTGTTTCTGGAAATGACGATAATAATGTTGGTGTTTCTAGTGGTGATAATGAAGTCATTAATCAGTTTGGAGAGGAAACGCCGAACCATTTGCAGATCATTAGTCCCGCAGATGGGTGGTATGCCGATGTTGTGGGACCGGTACTGCTAGTACCATATGACCTTCACCAGCTTGCGGAGGCAGAAGCTGAGGAGCTTCATGCAGCTGAAGAAAAACATGATCAGGAGCAACAGGTTCTTCCACTTAAGTGTGAGCCTGAACAGCATGCAATAGTAGCGTCAGCGACCATAGAACCTACTCTAGGAGCTCAGATTTTGGATGCTATCAGAGAGCTCAGGGCTGATTTCATCAGACAAGAGCTGACTGTTACTGCTAGGTTGAATGCAGTAGATGTGAGATTGGAGAGGCTTGAGGATGGCATTGCCCACATACTGCATGGGTCGAGTTTTGAGTCCACTCATTCTTAG 5055 0.3869 MSSFTSSSKICQEFESILTTDPKKRRYNVFLSFCAHDKGYFLSSLEEALSLEAGINVFGDIKRFQHVESVLNVIQDCKVAVVLFSKNYTNSSSCIQELEKITQCCRTSDLVVLPVFYQGVGPFYHGDMFGGDTFHDFLDRISMEEISKEEDKLMTWVAAITKANKYLGSRDLIPKPIYRYEHVSITDYIKDIVEHITCVINKNRDFCANSCTPSVKSGVQDVIQLLKQSKSPLIIGIWGMTGIGKSTIAQAIYDQIGLYFEHKSFLKDLGVLWEEQNHDQVLFKGHQHHRVLLVLDNIDKLEQLDVLGLRRSRKWFGEGSKIIITTRDRHLLKKHGIDHIYRVKELDESESLKVFNLAAFSQATTPQEDFSELSRQLVAYSRGLPLALKELGFFLNGEEALKWKNVLKSLKRLSIPAPRLQEALEKSFSDLSDEEKRIFLDIACLFVGMNLNDVKQILNRSTQSAALEISNLEDKSFLTIDENNKLGIHVLLQAMARDIIKRKSSNNTDQPKMYDVFLSFRGEDNRAKFMSHLYSSLQNAGIYVFRDDDEIQRGDHISISLLRAIEQSRTCIVVLSTNYANSRWCMLELEKIMEIGRNRGLVVVPVFYEVAPSEVRHQEGQFGKSFDDLISKNSVDESTKSNWKRELFDIGGIAGFVLIDSRNESADIKNIVEHITRLLDRTELFVAEHPVGVESRVEAVTKLLNIQNSDDVLILGIWGMGGMGKTTLAKAIYNQIGSKFEGRSFLLNIRELWETDTNQVSLQQKILDDVYKTLTFKIRDLESGKNMLKEKLSQNRVLLVFDDVNELEQLKALCGSRDWFGPGSRIIITTRDMHLLRLCGVYQMYTIEEMDKIESLKLFSWHAFKQPSPKEDFATHSTDVIAYSGGLPLALEVLGSYLADCEITEWQYVLEKLKCIPHDQVQEKLKVSFHGLKDFTEKQIFLDIACFFIGMDKKDVIQILNGCGFFADIGIKVLVERALVTVDNRNKLRMHDLLRDMGRQIIYEEAPSDPEKRSRLWRHGEVFDILEKRKGTEAVKGLALEFPRKDCLETKAFKKMNKLRLLRLAGVKLKGDFKYLSGDLKWLYWHGFAEPCFPAEFQQGSLVSVELKYSRLKQLWNKCQMLENLKILNLSHSLDLTETPDFSYLPNLEKLVLKNCPSLSTVSHSIGSLHKLILINLRGCTGLRKLPRSIYKLKSLETLILSGCSMIEKLEEDLEQMESLITLIADKTAITKVPFSIVRMKSIGYISFCGFEGFSRDVFPSLIRSWMSPSNNVISLVQTSVSMSSLGTSKDLQKLRILCVECGSDLQLTQDIVRFLGVLKATSYQKLEASAISIPSEISDMYASPLIDDFLGKVCTSGSMNHLKSLLIQMGTKCQVSDIAVDVLQTADETWDSFFLPCDNNSEWSSFSCKGCSIIFDIPTIKGRNLKSMILFVVYYSSSENITSDSCQGVLIINYTKRTIQVYKRDTLTSFEDEDWQSITSNLEPGNKVEVMVVFGEGFIVEKTTISLLYDEPVNKEMECCHVVDVDDVIVSGNDDNNVGVSSGDNEVINQFGEETPNHLQIISPADGWYADVVGPVLLVPYDLHQLAEAEAEELHAAEEKHDQEQQVLPLKCEPEQHAIVASATIEPTLGAQILDAIRELRADFIRQELTVTARLNAVDVRLERLEDGIAHILHGSSFESTHS* 1685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0562 1684 Gene3D - 345 432 IPR042197 -
Mtr4g0562 1684 Gene3D - 850 933 IPR042197 -
Mtr4g0562 1684 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 522 1510 IPR044974 GO:0006952
Mtr4g0562 1684 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 36 506 IPR044974 GO:0006952
Mtr4g0562 1684 Pfam NB-ARC domain 694 915 IPR002182 GO:0043531
Mtr4g0562 1684 Pfam NB-ARC domain 280 413 IPR002182 GO:0043531
Mtr4g0562 1684 Gene3D - 208 271 IPR027417 -
Mtr4g0562 1684 Gene3D - 677 842 IPR027417 -
Mtr4g0562 1684 Gene3D - 21 205 IPR035897 -
Mtr4g0562 1684 Gene3D Ribonuclease Inhibitor 1027 1371 IPR032675 -
Mtr4g0562 1684 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 36 506 - -
Mtr4g0562 1684 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 522 1510 - -
Mtr4g0562 1684 SUPERFAMILY Toll/Interleukin receptor TIR domain 21 164 IPR035897 -
Mtr4g0562 1684 SMART till_3 26 170 IPR000157 GO:0007165
Mtr4g0562 1684 SMART till_3 513 653 IPR000157 GO:0007165
Mtr4g0562 1684 CDD AAA 218 326 - -
Mtr4g0562 1684 SUPERFAMILY Toll/Interleukin receptor TIR domain 504 647 IPR035897 -
Mtr4g0562 1684 Pfam TIR domain 27 162 IPR000157 GO:0007165
Mtr4g0562 1684 Pfam TIR domain 514 676 IPR000157 GO:0007165
Mtr4g0562 1684 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 219 442 IPR027417 -
Mtr4g0562 1684 SUPERFAMILY L domain-like 989 1313 - -
Mtr4g0562 1684 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 678 944 IPR027417 -
Mtr4g0562 1684 SMART AAA_5 231 346 IPR003593 -
Mtr4g0562 1684 SMART AAA_5 711 848 IPR003593 -
Mtr4g0562 1684 ProSiteProfiles TIR domain profile. 512 675 IPR000157 GO:0007165
Mtr4g0562 1684 SUPERFAMILY "Winged helix" DNA-binding domain 420 504 IPR036390 -
Mtr4g0562 1684 Coils Coil 1585 1608 - -
Mtr4g0562 1684 ProSiteProfiles TIR domain profile. 25 154 IPR000157 GO:0007165
Mtr4g0562 1684 Gene3D - 506 676 IPR035897 -
Mtr4g0562 1684 Gene3D - 274 339 IPR027417 -
Mtr4g0562 1684 Coils Coil 1207 1227 - -
Mtr4g0562 1684 PRINTS Disease resistance protein signature 714 729 - -
Mtr4g0562 1684 PRINTS Disease resistance protein signature 791 805 - -
Mtr4g0562 1684 PRINTS Disease resistance protein signature 884 898 - -
Mtr4g0562 1684 PRINTS Disease resistance protein signature 1191 1207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0562 Mtr-Chr4 7079048 7087158 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0562 41 516 WRKY Transcription Factor Family AT4G12020 27.811 4.86e-36 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0562 - - cam:101511908 2175.59