Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0560 ATGAGTTTTAATGATTTGAGTGATGAAGAGAAACATATATTCCTTGATATAGCATATTTCTGCATTGGGATGAACCAAAATGATGTACTCCAAACATTGAATAGGTCAACACAATGTGCAGCTCTTCAAATAAATCTCCTCGAAGACAAGAGCTTTTTAACTATTGATAAGAAAAACAACCTTGAAATGCAAGTCGTGCTACAAGCCATGGCAAAAGATATTATTAAGAGTGAAACAAGTCAAATGCATCGTCAGCCAAAGATGTACGACGTCTTCTTGAGTTTCCGAGGGGAAGATAGTCGTGCGAAATTCATTTCACATCTGCATTCCTCTCTTGAAAATGCAGGGATTCATGTTTTCAAAGACGATTTCAAGATTCAACGAGGAGATCAGATATCAATCTCACTGTTTCGAGCAATTGGACAGTCTAGAATTTGTATCGTTGTTTTGTCTAAAAATTATGCTAATTCTAGATGGTGTATGCTTGAGTTGGAGAACATCATGGAAATTGGTAGAAACAGGGGTCTGGTCGTTGTACCAGTGTTCTATGAGGTGGATCCCTCAGAAGTACGTCATCAAAAAGGTCATTTTGGGAAAGGTTTTGATGATCTTATATCAAAAACCTCAGTTGATGAATCAACAAAGAGTAATTGGAGAAGAGAGCTCTTTGATATTTGTGGCATATCAGGGTTTGTCCTCATAAATTCAAGGAATGAAAGTGCTGATGTCAACAGTATTGTTAGTCATGTTACTCGTTTGCTAGATAGGACACAGTTATTTGTTGCCGAACATCCAGTGGGAGTAGAATCTCGTGTGCAAGCTGCAACCAAGCTATTAAAGATCCAAAAGTCAGAAGATGTTTTACTTTTAGGGATATGGGGAATGGGCAAAACAACCATAGCCAAATCCATTTATAATGAAATTGGTAGCAAGTTTGACGGAAAGAGCTTCCTTCTGAATATAAGGGAATTTTGGGAGACAGGTACTAATCAAGTTTCACTACAGCAACAAGTACTTTGTGATGTTTACAAAACAACTTCATTCAAGATACGTGACATTGAATCAGGGAAAAATACATTAAAGGAAAGACTCTCCGATAATAGAGTGCTTTTAGTGCTTGATGATGTAAATGAACTGGACCAAATAAAGGCATTGTGTGGAAGCCGCAAATGGTTTGGTCCCGGGAGCAGAATAATCATCACAACAAGAGATATGCGTCTTCTTAGATCGTGCAGAGTTGATCAAGTGTATGAAATAAAAGAAATGGATGAAATTGAATCTCTTGAGCTATTCAGTTGGCATGCATTCAAGCAACCAAGTCCAATAGAAGATTTTGCTACACATTTGACAGACATGGTTGCTTATTCTGGAAGATTTCCACTAGCACTTGAAGTCCTTGGCTCCTATTTGTCTGGCTGTAAAATAACAGAGTGGCAGAAAGTGTTGGAGAAACTCAAATGTATTCCCCATGATGAAGTACAAAAGAAGCTGAAAGTAAGCTTCGATGGTTTAAAAGATGTTACAGACAAACAAATATTCCTTGATATAGCTTGTTTCTTTATTGGGATGGACAAAAATGATGCAATACAAATATTAAATGGGTGTAGATTTTTTGCTGATATTGGAATTAAAGTCCTTGTAGAGCGAAGCCTTGTAACTGTTGACAATAGGAACAAGCTTAGAATGCATGATTTGTTGAGAGACATGGGAAGACAAATAATTTATGAGGAATCGCCATTTGATCCGGAGAACCGCAGTAGGTTGTGGCGCCGTGAGGATGCGCTTGATGTATTATCAAAGCATAAGGGAACAAATGCTGTCAAGGGACTGGTTTTGGAATTTCCTATAAAAAATAAAGTTTGTCTGAATACCAAAGCATTTAAGAAGATGAATAAACTCAGATTGCTTCGACTTGGTGGGGTGAAGCTTAATGGAGATTTTAAATACCTTTCAGAAGAACTTAGGTGGCTTTGCTGGCATGGATTTCCATCAACTTACACTCCTGCAGAATTTCAACAGGGAAGTCTAGTTGTCGTCGAATTAAAATATAGCAATCTCAAACAGATATGGAAGAAGTGCAAGATGCTAGAGAATCTAAAAATTCTTAATCTCAGTCATTCTTTGAATTTGACTGAAACCCCAGACTTTTCATATATGCCTAATCTTGAAAAGATAGTACTCAAAGGCTGTCCAAGTTTGTCTACAGTCTCCCATAGCATTGGATCTCTACATAAACTTCTTCTAATAAATTTGACAGACTGCACAGGTCTTCGAAAACTTCCGAAAAGCATCTATAAATTAAAATCTCTAGAAACTTTGATTCTTTCGGGATGTTCCAAGATTAACAAATTGGAGGAGGACTTGGAACAGATGGAATCGTTGAAAACCTTGATTGCGGATAAGACTGCTATAACAAAAGTGCCCTTTTCAATAGTTAGATTGAAAAGCATTGGATATATTTCTTTTCGTGGCTTTGAAGGATTTTCACGTGATGTATTCCCTTCTCTCATTCGGTCTTGGCTGTCACCATCAAATAATGTGATATCCTTAGTTCAAACATCTGAGTCCATGTCATCTCTTGGTACTTTCAAGGACCTTACAAAGCTTCGAAGTCTTTGTGTGGAGTGTGGCTCAGAACTACAACTAACTAAAGATGTAGCAAGAATTTTAGATGTACTAAAAGCTACAAATTGTCATAAATTGGAAGAAAGTGCCACTTCATCACAGATTTCTGATATGTATGCTTCTTCTTCTATTGATGATTGCCTTGGTCAAGTTTGCATTTCAGGGCCAAGGAATTACTTGAAATCTCTCTTAATTCAAATGGGAACTAAATGTCAAGTCCCCAATATCGCCGAAGACAACCTTTTACAGACTACAAATGAGATTTGGGATACATTTTTGCTCTATAATTCTGAGTGGTCAACCTTTAGTTGCCATGGATGCTCCATAAGATTTGATATCCCAACAATGAAGGGGCGTAACTTGAAGAGTATGATGTTGTCCGTCGTCTATTACTCTACTCCGGAGAACATAACAGCAGAAGGTTGCCATGGTGTGTTAATCATTAATCACACAAAGACAACCATTCAGGCCTATAAAAGAGATACACCAACTTCCTTTAAGGATGATGATTGGAAGAACATAACATCAAATCTAGAACCTGGTAACAAAGTGGAGGTTATGATTGTTTTTGGGGAGGGATTCATTGTAGAGAAGACAACAATATCTCTCTTATATGCTGAACCAATTGACAAAGAAATTGAACATTGCAATGCAAGAGATGATAATGTTACCACTTCTTGTCGAGATCAAAATGTGAGTGATAATAGAGTATATTTATTTACTTTTTCCTTATATAAAATCTTTCTTAATGCTATGAGGCAAGCTGGATTTAACAACTGA 3405 0.3706 MSFNDLSDEEKHIFLDIAYFCIGMNQNDVLQTLNRSTQCAALQINLLEDKSFLTIDKKNNLEMQVVLQAMAKDIIKSETSQMHRQPKMYDVFLSFRGEDSRAKFISHLHSSLENAGIHVFKDDFKIQRGDQISISLFRAIGQSRICIVVLSKNYANSRWCMLELENIMEIGRNRGLVVVPVFYEVDPSEVRHQKGHFGKGFDDLISKTSVDESTKSNWRRELFDICGISGFVLINSRNESADVNSIVSHVTRLLDRTQLFVAEHPVGVESRVQAATKLLKIQKSEDVLLLGIWGMGKTTIAKSIYNEIGSKFDGKSFLLNIREFWETGTNQVSLQQQVLCDVYKTTSFKIRDIESGKNTLKERLSDNRVLLVLDDVNELDQIKALCGSRKWFGPGSRIIITTRDMRLLRSCRVDQVYEIKEMDEIESLELFSWHAFKQPSPIEDFATHLTDMVAYSGRFPLALEVLGSYLSGCKITEWQKVLEKLKCIPHDEVQKKLKVSFDGLKDVTDKQIFLDIACFFIGMDKNDAIQILNGCRFFADIGIKVLVERSLVTVDNRNKLRMHDLLRDMGRQIIYEESPFDPENRSRLWRREDALDVLSKHKGTNAVKGLVLEFPIKNKVCLNTKAFKKMNKLRLLRLGGVKLNGDFKYLSEELRWLCWHGFPSTYTPAEFQQGSLVVVELKYSNLKQIWKKCKMLENLKILNLSHSLNLTETPDFSYMPNLEKIVLKGCPSLSTVSHSIGSLHKLLLINLTDCTGLRKLPKSIYKLKSLETLILSGCSKINKLEEDLEQMESLKTLIADKTAITKVPFSIVRLKSIGYISFRGFEGFSRDVFPSLIRSWLSPSNNVISLVQTSESMSSLGTFKDLTKLRSLCVECGSELQLTKDVARILDVLKATNCHKLEESATSSQISDMYASSSIDDCLGQVCISGPRNYLKSLLIQMGTKCQVPNIAEDNLLQTTNEIWDTFLLYNSEWSTFSCHGCSIRFDIPTMKGRNLKSMMLSVVYYSTPENITAEGCHGVLIINHTKTTIQAYKRDTPTSFKDDDWKNITSNLEPGNKVEVMIVFGEGFIVEKTTISLLYAEPIDKEIEHCNARDDNVTTSCRDQNVSDNRVYLFTFSLYKIFLNAMRQAGFNN* 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0560 1134 SMART till_3 88 228 IPR000157 GO:0007165
Mtr4g0560 1134 Gene3D - 86 251 IPR035897 -
Mtr4g0560 1134 Coils Coil 781 801 - -
Mtr4g0560 1134 SUPERFAMILY L domain-like 561 887 - -
Mtr4g0560 1134 Pfam NB-ARC domain 275 493 IPR002182 GO:0043531
Mtr4g0560 1134 Gene3D - 252 417 IPR027417 -
Mtr4g0560 1134 Gene3D - 422 505 IPR042197 -
Mtr4g0560 1134 PRINTS Disease resistance protein signature 286 301 - -
Mtr4g0560 1134 PRINTS Disease resistance protein signature 363 377 - -
Mtr4g0560 1134 PRINTS Disease resistance protein signature 456 470 - -
Mtr4g0560 1134 PRINTS Disease resistance protein signature 765 781 - -
Mtr4g0560 1134 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 252 516 IPR027417 -
Mtr4g0560 1134 Gene3D Ribonuclease Inhibitor 601 917 IPR032675 -
Mtr4g0560 1134 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 1 78 - -
Mtr4g0560 1134 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 97 1080 - -
Mtr4g0560 1134 SUPERFAMILY Toll/Interleukin receptor TIR domain 80 230 IPR035897 -
Mtr4g0560 1134 Pfam TIR domain 89 250 IPR000157 GO:0007165
Mtr4g0560 1134 ProSiteProfiles TIR domain profile. 87 254 IPR000157 GO:0007165
Mtr4g0560 1134 SUPERFAMILY "Winged helix" DNA-binding domain 2 79 IPR036390 -
Mtr4g0560 1134 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 97 1080 IPR044974 GO:0006952
Mtr4g0560 1134 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 78 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0560 Mtr-Chr4 7036576 7042939 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0560 52 814 WRKY Transcription Factor Family AT4G12020 31.552 1.81e-88 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0560 - - mtr:MTR_4g020550 2188.69