Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0559 ATGTCTTCTACTACCAATCCAAAGAGAAAGAGCTACGACGTGTACTTGGGTTTCTGTGATGAAGATGCGGGTTCTTTTGCTTTGGAACTCTATACAGCTCTTAGTTCACAAGCTGAAATCATTGTTTTCTGGGACGATTACAGGATTGGATTTGGAGATCAAGAAGTACCAACCTCGGTGCTGAATGTGATTGCAGATTCCAAAGTTGTTGTAGTCATATTATCAAAGAATTATACGCATTCTAGATGGTGTCTTCAAGAATTGGAGAAAATAACCCAGTGTTACCGAACCAAAGATGGTCCCGTTGTTTTACCTGTGTTCTATGATGGTGTCCATTCCCCCAGTAGAATATTGCAGGAAGATATGTATGGAGAGGCTTTTCATGATTTTCTGGATAGAATTTCAATGAAGGAGAAAACCTCTTCCGAAGATGAAGACAAGTTCATGAGTTGGGTAGCAGAAATCAGCAATGAAGCTTCCAAATATGCTGCATTAGCTTTTTTACGATATGGACCAAATCAGAACAGAGGTGAACATATAACACATGTAGTTAAATGTGCTACTCTTATTGTAAGCAAGAAAAGAGCCTCGTTCCATATAGAGAGCATACACTCTCGTGCCCAAGATGTGATTCAACTATTGAAACAATCAAAATGTCCTCTTTTAGTAGGGATATGGGGGATGACAGGGATTGGCAAATCAACCATCGCCAATGTCATTTATCATAAATTTGGTCCCTTTTTTCAGGGGTTTTGCTTACTCAAAACAATCAGCGGAATTTGTAAAAAAAAAATTCACGGTCTAACTTCCTTGCAAGAGAGTCTTGCTGAATTTTATAGCAACAAACTTTCAATCGAGTCAGGAAAAAATATTATAAAAAGAAGCTTTCAGCATAAAAGAGTACTCATTGTACTTGACGATGTTGATAAGTTGGATCAGTTAAAAGTTTTGTGTGGAAGTCGATATTGGTTTGGTGCTGGGAGCAAAATAATCATCACCACACGAGATAGGCGTCTGCTTAAGCAGCATGGAGTTGACCATATATACAGCGTGAAAGAACTGAACGAACGTGAATCTCTTGCACTTTTGAATTGGGGTGGATACAGCCTACCAACAAATACTCAACAATATTTTGGTGAACCTTCTAGGGAATTAGTTACTAATTCTTGGGGATTGCCTCTTGCTCTGGAAGAACTTGGGTTGTTTTTGAATGGAAGGAAGCACTTCAGTGTAAGAATGTGTTGA 1245 0.3871 MSSTTNPKRKSYDVYLGFCDEDAGSFALELYTALSSQAEIIVFWDDYRIGFGDQEVPTSVLNVIADSKVVVVILSKNYTHSRWCLQELEKITQCYRTKDGPVVLPVFYDGVHSPSRILQEDMYGEAFHDFLDRISMKEKTSSEDEDKFMSWVAEISNEASKYAALAFLRYGPNQNRGEHITHVVKCATLIVSKKRASFHIESIHSRAQDVIQLLKQSKCPLLVGIWGMTGIGKSTIANVIYHKFGPFFQGFCLLKTISGICKKKIHGLTSLQESLAEFYSNKLSIESGKNIIKRSFQHKRVLIVLDDVDKLDQLKVLCGSRYWFGAGSKIIITTRDRRLLKQHGVDHIYSVKELNERESLALLNWGGYSLPTNTQQYFGEPSRELVTNSWGLPLALEELGLFLNGRKHFSVRMC* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0559 414 Pfam NB-ARC domain 210 409 IPR002182 GO:0043531
Mtr4g0559 414 PRINTS Disease resistance protein signature 222 237 - -
Mtr4g0559 414 PRINTS Disease resistance protein signature 295 309 - -
Mtr4g0559 414 PRINTS Disease resistance protein signature 389 403 - -
Mtr4g0559 414 SMART till_3 11 158 IPR000157 GO:0007165
Mtr4g0559 414 Pfam TIR domain 12 128 IPR000157 GO:0007165
Mtr4g0559 414 Gene3D - 10 188 IPR035897 -
Mtr4g0559 414 ProSiteProfiles TIR domain profile. 10 156 IPR000157 GO:0007165
Mtr4g0559 414 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 121 IPR035897 -
Mtr4g0559 414 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 23 407 - -
Mtr4g0559 414 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 407 IPR044974 GO:0006952
Mtr4g0559 414 Gene3D - 189 348 IPR027417 -
Mtr4g0559 414 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 406 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0559 Mtr-Chr4 7033891 7036041 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0559 223 408 WRKY Transcription Factor Family AT5G45050 32.620 1.23e-21 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0559 - - mtr:MTR_4g020550 682.174