Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0556 ATGGAGTTGACCATATACACAGTGAAAGAACTAGACGAAAGTGAATCGCTTGAACTTTTTAATTCAGGTGCATTCAAGCTAGCTACTAATCCAAAGAGGAAGATATACGACGTGTACCTGAGTTTCTATGACGAAGACTCGCGTTCTTTTGTTTTGAGTATATATACAGCTCTTACTTCAAAGCCTGGGGTTGTTGTTTTCTGGGAGGATCAATGGTTTGGAAGTGAAGATCGGTCATCAAAACAACCTTCTAATTCAGCGCTGAATGTTATAGAAGATTGCGAGATTGCTGTGATCATATTTTCAAAGAATTATACTAAATCAAGATGGTGTCTTCAAGAATTGGAGAAAATAACCCAGTGTTGCCAAAGAACCACAGATGGTCTCATTTTTCTGTCTGTGTTCTATGATGATGTCTATTCATCCGACAAAAGATTGTGGGTCCGACGAGATATCTTTGGAGAGGATTTTGTAGACAGAATCTCGATCGAGAAGGAAACATGTTCTGAAGACGAAGACAAGTTCATGACTTGGGTAGCAGCAGTCACTAATGAAGCTTCCAAATATGATGAATTATATTCTTTACATTGCAGACATAACTCACATGAGCACGAAAGTGAATTAATTAAGATTGTAGTTACTCGTATGATGAGCAAGAAGAGATACCAGTTCAAAGAGAGCATACATTCTCATGCGCAAGATGTGATTCAACTATTGAAACAATCAAGATCTCCTCTCCTGCTAGGGATGTGGGGGATGTCAGGGATTAGTAAATCAACCATTGCCCAAGCCATTTTTAATCAGATTGGTCCCTATTTTGAGCACAAGTGCAACATCGATAACGTTGGGGAAGCTTGGGAACAAGATAATGGTCAAGTTTCTTTGCAAGATGAACTTCTTTGTTTTATTGGCGGAGCAACTGAAATAAAAATACCTTCAGTTGAATCAGGAAGAATTATTTTAAAAGAAAGACTTCAACATAAAAGGGTACTTCTTCTACTTTACAATGTTGACAAATTGGAGCAACTAAAGGCTTTGTGTGGAAGTCGGGATTGGTTTGGCCCAGGCAGAAAAATAATCATCACAACAAGCAATAGACATCTGCTCAAGGAGCATGGAGTTGACCATATACATAGAGTGAAAGAACTAGACAATAAATTCGGGTGA 1167 0.3839 MELTIYTVKELDESESLELFNSGAFKLATNPKRKIYDVYLSFYDEDSRSFVLSIYTALTSKPGVVVFWEDQWFGSEDRSSKQPSNSALNVIEDCEIAVIIFSKNYTKSRWCLQELEKITQCCQRTTDGLIFLSVFYDDVYSSDKRLWVRRDIFGEDFVDRISIEKETCSEDEDKFMTWVAAVTNEASKYDELYSLHCRHNSHEHESELIKIVVTRMMSKKRYQFKESIHSHAQDVIQLLKQSRSPLLLGMWGMSGISKSTIAQAIFNQIGPYFEHKCNIDNVGEAWEQDNGQVSLQDELLCFIGGATEIKIPSVESGRIILKERLQHKRVLLLLYNVDKLEQLKALCGSRDWFGPGRKIIITTSNRHLLKEHGVDHIHRVKELDNKFG* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0556 388 ProSiteProfiles TIR domain profile. 34 183 IPR000157 GO:0007165
Mtr4g0556 388 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 45 382 IPR044974 GO:0006952
Mtr4g0556 388 Gene3D - 210 377 IPR027417 -
Mtr4g0556 388 Gene3D - 8 174 IPR035897 -
Mtr4g0556 388 PRINTS Disease resistance protein signature 247 262 - -
Mtr4g0556 388 PRINTS Disease resistance protein signature 324 338 - -
Mtr4g0556 388 Pfam NB-ARC domain 231 384 IPR002182 GO:0043531
Mtr4g0556 388 Pfam TIR domain 36 230 IPR000157 GO:0007165
Mtr4g0556 388 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 230 385 IPR027417 -
Mtr4g0556 388 SMART till_3 35 185 IPR000157 GO:0007165
Mtr4g0556 388 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 45 382 - -
Mtr4g0556 388 SUPERFAMILY Toll/Interleukin receptor TIR domain 32 146 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0556 Mtr-Chr4 6979707 6981178 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0556 248 386 WRKY Transcription Factor Family AT5G45050 31.655 6.32e-17 81.3