Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0555 ATGGCAAATAGACTTCTGTTTGGCAACAGCACTGAAATTGGATTTTATTGTAAACTCACCAATGCCTATTGCTTGGTTGGCACTGGAGGTTCCAATAACTTCTACAGTGCAATTGAGGCTGAACTAGAAGATGCGATCCCTATCATCAAAACCTCCGTTGGTGGTGGCTGTTCTGGTGTTGGTCGTTTTTGTATTGGAAACAAAAATGGGCTTCTCTTGCCCCATACAACCACACTCGAAGAATTGCTGCATATAAAAAGAAGTCTGCCTGATGGAGTTGCTCTTCAGCTCATGCAAGAAGAATTGTGTGCTTCTTCAAGATTTATAGCATGTAATGACTATGTGGCCCTTGCGCACGCCGATCTTCACTCGGATGCTAAGGAATTAATCACAGATATCCTTGGGATAGAAGTTTTCAAGCCGGAAGATTATTATAGTTTTTTTTCTGGAAGTTACTGTGCCTTATCCAACATAGGTGGTTTGATCCACCCTCATGCTTCCAAAGAAGTCTTGGATGAACTTTCTGCAGCTCTTGGAGTTCCTTTTGAAACTGGGACCGTCAACCGAGGCAGCCAAGCTATAGCTCCTGGCATGACCGTAAATGATTGGACAGCCTTTTGTGGTTCAAGCACCACAAGAGCAGAGCTCTGTGTGATTGATAGAGTTTTCAAGCTGAGGGAACCATTATGA 690 0.4348 MANRLLFGNSTEIGFYCKLTNAYCLVGTGGSNNFYSAIEAELEDAIPIIKTSVGGGCSGVGRFCIGNKNGLLLPHTTTLEELLHIKRSLPDGVALQLMQEELCASSRFIACNDYVALAHADLHSDAKELITDILGIEVFKPEDYYSFFSGSYCALSNIGGLIHPHASKEVLDELSAALGVPFETGTVNRGSQAIAPGMTVNDWTAFCGSSTTRAELCVIDRVFKLREPL* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0555 229 PIRSF Transl_init_IF-6 1 227 IPR002769 GO:0042256|GO:0043022
Mtr4g0555 229 Pfam eIF-6 family 5 204 IPR002769 GO:0042256|GO:0043022
Mtr4g0555 229 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 227 IPR002769 GO:0042256|GO:0043022
Mtr4g0555 229 SMART eIF6neu2 3 205 IPR002769 GO:0042256|GO:0043022
Mtr4g0555 229 Hamap Translation initiation factor 6 [eif6]. 1 229 IPR002769 GO:0042256|GO:0043022
Mtr4g0555 229 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 227 - -
Mtr4g0555 229 Gene3D - 1 226 - -
Mtr4g0555 229 TIGRFAM eIF-6: putative translation initiation factor eIF-6 5 224 IPR002769 GO:0042256|GO:0043022
Mtr4g0555 229 SUPERFAMILY Pentein 1 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0555 Mtr-Chr4 6960398 6962958 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0555 1 227 Eukaryotic Initiation Factors Gene Family AT3G55620 61.674 2.96e-100 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0555 K03264 - ath:AT3G55620 279.256