Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0550 ATGGGGGGTCGTTGCTCTAAATTCTCTTTCTGTTGGTTCCACTCTCACCTCAATCCTTCTGTTCTTGAATCCTCTGACCAAGAAAATGGTGGCAAAAATGAAAAAAACTTGTGGCCTAGTTTTAGTGAGTACAGTTTGGAAGAATTGAAGGCTGCTACAAATGGATTCTCCTCGGAAAACATAGTCTCTGAGCATGGTGAGAAAGCTCCAAATGTTGTTTACAAAGGGAAACTTGAGAATGGACAGTTGATTGCTGTCAAACGTTTCAACAAGTTCGCTTGGCCCGATTCTCGACAATTCATTGAAGAATCTAAACAAGTGGGGAACCTTAGAAGTGATCGTTTGGCAAATTTGATTGGTTGTTGCTATGAAGGGGATGAGAGGCTGCTAGTGGCAGAGTTTATGCCACATGAAACTCTGGCTAAGCATCTCTTTCACTGGGAGTCACAGCCCATGAAATGGGCAATGAGATTGAGAGTGGCCTTCTATTTAGCTCAAGCTCTTGAATATTGTACAAGTAAAGGAAGGGGGTTGTATCATGATCTCAATGCCTATAGAATCTTGTTTGATCAGGATGGTAATCCAAGGTTATCTTGCTTTGGACTGATGAAGAACAGCAGAGATGGCAAGAGTTACAGTACAAACTTGGCTTTCACCCCTCCTGAGTACTTAAGGACAGGTAGAGTGACGGCGGAGAGTGTGGTTTACAGTTTTGGAACTTTGTTGCTTGATCTCTTGAGTGGTAAACATATTCCACCAAGCCATGCACTTGATCTGATACGTGGCAAAAACTACTTGATGTTGATGGATTCGGCATTAGAGGGTCACTTTTCAAAGGATGATGGAACTGAGTTAGTTCGTTTGGCTTCACGTTGTTTACAATATGAAGCTCGTGAGAGGCCAAATGCTAAGTCTCTTGTTGAAACTCTTATGCCACTTCAGAAAGAAACAGAGGTTCCCTCACATGTTCTGATGGGTCTAAAGCAAGAAACAGAATCATCAACAAAGCCCTTGTCATTGACATCTTTTGGTGAATCATGTTTGAGATTGGATCTTACTGCCATACATGCAATATTAGAGAAGACTGGTTACAAAGATGATGAAGGAATTGCCAATGAGCTTTCCTTTCAATTGTGGACTAGTCAAATGCAAGAGACCTTGAATTTGAAGAAGCATGGAGACGCTGCTTTTCGAGCTAAGGACTTTGTCACAGCCATTGACTGCTACACACAATTCATAGATGGAGGGACCATGGTGTCACCTACAGTGTATGCAAGGCGCTGCTTGTCTTATTTGATGAATGACATGGCACAGGAAGCTCTAGGGGATGCCATGCAAGCTCAAGTGGTATCTCCAGAGTGGCCTACTGCTTTATATCTTCAAGCAACTTGTCTTTTCAGCCTTGGAATGGAAAATGATGCACAAGAGACTCTCAAAGATGGAACTAACATGGAAGCTAAAAAGCATAAAAATTTGAAAACTGTATAG 1488 0.42 MGGRCSKFSFCWFHSHLNPSVLESSDQENGGKNEKNLWPSFSEYSLEELKAATNGFSSENIVSEHGEKAPNVVYKGKLENGQLIAVKRFNKFAWPDSRQFIEESKQVGNLRSDRLANLIGCCYEGDERLLVAEFMPHETLAKHLFHWESQPMKWAMRLRVAFYLAQALEYCTSKGRGLYHDLNAYRILFDQDGNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTAESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNYLMLMDSALEGHFSKDDGTELVRLASRCLQYEARERPNAKSLVETLMPLQKETEVPSHVLMGLKQETESSTKPLSLTSFGESCLRLDLTAIHAILEKTGYKDDEGIANELSFQLWTSQMQETLNLKKHGDAAFRAKDFVTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMAQEALGDAMQAQVVSPEWPTALYLQATCLFSLGMENDAQETLKDGTNMEAKKHKNLKTV* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0550 495 Gene3D Transferase(Phosphotransferase) domain 1 136 328 - -
Mtr4g0550 495 PANTHER SERINE/THREONINE-PROTEIN KINASE-RELATED 1 491 - -
Mtr4g0550 495 Pfam Protein tyrosine and serine/threonine kinase 72 310 IPR001245 GO:0004672|GO:0006468
Mtr4g0550 495 Gene3D Phosphorylase Kinase; domain 1 30 134 - -
Mtr4g0550 495 ProSiteProfiles Protein kinase domain profile. 59 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g0550 495 SUPERFAMILY Protein kinase-like (PK-like) 35 319 IPR011009 -
Mtr4g0550 495 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 491 IPR045845 GO:0004672|GO:0009742
Mtr4g0550 495 SUPERFAMILY TPR-like 387 481 IPR011990 GO:0005515
Mtr4g0550 495 Gene3D Tetratricopeptide repeat domain 383 495 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0550 Mtr-Chr4 6885752 6890971 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0550 18 310 Glycoside Hydrolase AT3G07070 33.645 1.20e-41 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Mtr4g0550 PK_Tyr_Ser-Thr 7.5e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0550 - - gmx:100814477 926.776