Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0532 ATGACTAGAATCAGAAAAAAGAAGATCATATCCAAATTGATTGAGAATAAGACTCGAAGAAAGGCGTGCTATAAGAGAAGATTGAAAGGGTTGTTCACCAAAATAGAGCATATGACAATCTTATGTGGCATTGAGGCATGTGCGATTGTGTTTGGTCCAAGTGATACAAAACCATCAATATGGCCATCTCCTACGGTGGCTGAAGAGCTAATAACCAAGTTTGAGTCACTGTCATTGGATGTACAATCGAAAAATAAGACTGATCAATTGACTTTTTTGAAGGATAAGGGCAAAAAACTTGAAGCAAGCCTTGAAAAGATCAACAAAGAAAATGAAGAGACTTTAATGGGAGCTTATATGCATCAAATTGAAAACGAAGGTAAGTCTTTAGATGATTTTGATCATGATGTGCAGAATCGCTTGATTGCTTTTACTCTTGAAAAAATTAAGATCACTAGAAAGATAACTAGGCATTTAGAAAAGGAGATCTTGCCTCTTAATAATCCTCCTCCACCGTTGGCACCAATATCTTTTACTTTAGACAATGGTGATGGGGTGGATTATGGGGTTAACATGTATGGACATGTTTTGAACCAACAACCCTTGTCAGATTTGGTCGAGAAAGTTGATCAAATGAGTAGTGGTTTCAATAACAACCCTGGAAGTAGCATGGGGATACCTCCACTTGCAGATCTTAGTGGTGGTGCTTGTGATAAATTGGCTAATCAAGCTGATTTTGTTGGTTTTGATAACGGAATGGGGATATCATCACCTGAATATTCTAGTAGTGGTTTTGATACAACATTTTTTCAAGACGATTTTGAAGATTTCGATAGTATCATGAAGATACCATCACATGAAAATCATAGTGGTAATGTTCATGATATGTTTCTTCCTCGAGGAAATTTGGGGCATTTTATTAACAATATAGGTACCAACATTGGGAAACAATCACATGAAAATCCTAGTGGTGGTGTAGGTATGTTGCCTCCTCAAGGATATTTTGGAGGTCAAAGCAACTTTCAAGGTTTTGATGACATTACAGGTAGCACTTCAGGGATACTACCACATGCAAATCTGAATGGGAATGTTGATTCGTTGCCTCCTCAAGAAAATTTTGAAGGGGAAGAAAACTTTGGAGGTTTTGACAACACAGGTAGCGGCATGTGGATACCACATTCAAATTCGAGTGGTGGTGATGCATTGCTTCCTCAAGAAAATTTTGGAGGTCAATTTAACTTTGAAGATTTTGATAACAACACATGTAGCAACATGTTGATACCACCACATACAAATCCTGATGTTGGTGATGTTGATGTGTTGTCTCATCGAGGAAATTTCGGAGTTCAAGAAAACTTTGGAGGTTTTGATGATAATACATGTAGCAACATGTGGAAACCTCCACATGAAAATCCAAGCAACAGTGGTGTTGATATGATGACTCTTCATCAAAACAACTTTGGTGGCAATATTAATGGAGATGGGATGTGGAGTTTCAATGCAAACATTGTTGACAATAATTACGGGAGCAACTTCAACCCTGGATTTCCTTCCGAATAA 1560 0.3763 MTRIRKKKIISKLIENKTRRKACYKRRLKGLFTKIEHMTILCGIEACAIVFGPSDTKPSIWPSPTVAEELITKFESLSLDVQSKNKTDQLTFLKDKGKKLEASLEKINKENEETLMGAYMHQIENEGKSLDDFDHDVQNRLIAFTLEKIKITRKITRHLEKEILPLNNPPPPLAPISFTLDNGDGVDYGVNMYGHVLNQQPLSDLVEKVDQMSSGFNNNPGSSMGIPPLADLSGGACDKLANQADFVGFDNGMGISSPEYSSSGFDTTFFQDDFEDFDSIMKIPSHENHSGNVHDMFLPRGNLGHFINNIGTNIGKQSHENPSGGVGMLPPQGYFGGQSNFQGFDDITGSTSGILPHANLNGNVDSLPPQENFEGEENFGGFDNTGSGMWIPHSNSSGGDALLPQENFGGQFNFEDFDNNTCSNMLIPPHTNPDVGDVDVLSHRGNFGVQENFGGFDDNTCSNMWKPPHENPSNSGVDMMTLHQNNFGGNINGDGMWSFNANIVDNNYGSNFNPGFPSE* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0532 519 Coils Coil 90 113 - -
Mtr4g0532 519 SUPERFAMILY SRF-like 6 97 IPR036879 GO:0003677|GO:0046983
Mtr4g0532 519 Gene3D - 16 99 IPR036879 GO:0003677|GO:0046983
Mtr4g0532 519 PANTHER MADS BOX PROTEIN 9 232 - -
Mtr4g0532 519 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 14 55 IPR002100 GO:0003677|GO:0046983
Mtr4g0532 519 ProSiteProfiles MADS-box domain profile. 4 54 IPR002100 GO:0003677|GO:0046983
Mtr4g0532 519 CDD MADS_SRF_like 6 88 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mtr4g0532 519 PANTHER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE-RELATED 9 232 - -
Mtr4g0532 519 SMART madsneu2 4 63 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0532 Mtr-Chr4 6664857 6666416 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0532 4 170 Type I MADS-box Gene Family AT2G40210 29.940 1.40e-20 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr4g0532 SRF-TF 3.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0532 - - mtr:MTR_4g019670 1026.93