Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0530 ATGGCAGTCACATTCTATAACCTTAAAGCTGAATCTGGCTTGAAGAAGCTTGACGAGTACCTTCTCTCACGCAGTTACATCACTGGGTACCAAGCTTCAAAGGATGACATCACTGTCTATTCAGCTTTGCCATCAGTTCCATCATATGAATATGGGAATGTTGCTAGGTGGTACAAGCACATTGATGCTTTGTTGAGAATTTCTGGTGTTTCTGGTGAGGGATCTGGTGTCACCGTGGAATCTTCTCTTGTGGCTGAAGATGCTGTTGCCACTCCTCCAGTTTCTGACACAAAGGCTGCTGAAGCCGAGGACGATGATGATGACGATGTTGATTTGTTTGGCGAAGAGACTGAGGAAGAGAAGAAGGCAGCTGAGGAACGGGCAGCAGCTGTGAAGGCATCTGGCAAAAAGAAAGAAAGTGGAAAATCATCTGTACTGTTGGATGTGAAGCCATGGGATGATGAAACCGACATGAAGAAGCTCGAAGAAGCAGTGAGATCTGTTCAGATGGAAGGGTTGTTCTGGGGTGCATCCAAACTTGTTCCTGTTGGGTACGGTATCAAGAAACTTCAAATTATGCTTACTATTGTGGATGATCTTGTTTCCGTCGACGATATGGTTGAGGATCGTCTTACTGCTGAGCCAATCAATGAGTATGTCCAGAGCTGTGACATTGTTGCCTTCAATAAAATCTAA 696 0.4483 MAVTFYNLKAESGLKKLDEYLLSRSYITGYQASKDDITVYSALPSVPSYEYGNVARWYKHIDALLRISGVSGEGSGVTVESSLVAEDAVATPPVSDTKAAEAEDDDDDDVDLFGEETEEEKKAAEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLFWGASKLVPVGYGIKKLQIMLTIVDDLVSVDDMVEDRLTAEPINEYVQSCDIVAFNKI* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0530 231 Gene3D - 4 79 - -
Mtr4g0530 231 Coils Coil 114 134 - -
Mtr4g0530 231 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 106 114 IPR001326 GO:0003746|GO:0005853|GO:0006414
Mtr4g0530 231 SMART EF1_GNE_2 142 231 IPR014038 GO:0003746|GO:0006414
Mtr4g0530 231 PANTHER ELONGATION FACTOR 1-DELTA 1-RELATED 1 231 - -
Mtr4g0530 231 CDD EF1B 140 231 IPR014038 GO:0003746|GO:0006414
Mtr4g0530 231 Gene3D - 135 231 IPR014717 -
Mtr4g0530 231 SUPERFAMILY GST C-terminal domain-like 8 67 IPR036282 -
Mtr4g0530 231 Pfam EF-1 guanine nucleotide exchange domain 144 231 IPR014038 GO:0003746|GO:0006414
Mtr4g0530 231 MobiDBLite consensus disorder prediction 88 110 - -
Mtr4g0530 231 SUPERFAMILY eEF-1beta-like 139 231 IPR036219 -
Mtr4g0530 231 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 220 231 IPR001326 GO:0003746|GO:0005853|GO:0006414
Mtr4g0530 231 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0530 Mtr-Chr4 6641316 6643650 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0530 5 231 Eukaryotic Initiation Factors Gene Family AT2G18110 79.825 6.94e-114 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0530 K03232 - gmx:100777627 338.191