Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0522 ATGGCTAGTGATGAGGGTTTTGAAGGTTACCATGTCCCACAACAAAGTAGAAGAGATAAGCTTAGAGTTGTTGTGGCTCAAAATCAACAACCTCATGAAACTTTACTTCCTTTCTATGATTCTTCTTCTTTCATTACTAATTTTACTAACCAACAAGGTTTGAAGCATAATTCATGTTCTTCTTCTAATTCTATCAAGGATTTAGAGTGTTCTAATTTAATGATGCGTTTTTCAAGAGAAGATCAAGGAAAAAGGGTCATGAATATTTCTTCTTCTAATCCTTATTTTGAGACTTTGAATAACAATCAAGGAAATAATAATAACCCTTTTCTTTATCAAGCACAAAACATTCAAAATCTTAGACAATTTGATGAACAACATAGTAGTACTAGTACTATGATGTTGAATAATCATGAACCTTTGTCTTTGTCACTTTCATCAAATAAAAGTGTTAGTAGTAATTTACCTTTGGAGTTGAATCTACAAAGATATGGATCTATGATTTATGGTGGTGGAGGTGTGATTCAAGGTTTGGTTGAAGGAGGAGGAAGTGGTGGTTCAGTTCCATTTACTGGATATGCTTCTGTTTTGAAGGATTCTAGGTTTTTGAAACCAGCTCAAGAATTGTTGGAAGAGATGTGTGATGTTGGAAATCTTGGTGTTTGTGGTGAGAAGGTTGTTGTTGTTGCTGATTCTTCTTTGATGATGGAATCTCCTTTGGAAAGATTGAGTGAAGAAGATCCATTTGGTGATGGTCGCAATAAATCAAGATTGTTGACTATGCTTGATGAGGTTTACAAGAGGTACAGGCAATACTACCAACAGATGCAATCGGTTGTGACATCATTTGAGTATGTTTCTGGTCTCAACAATGCAGCTCCTTATGCAAGTTTGGCGATAAAAGCTATGTCCAAACATTTTAGATGCTTGAAGAAGGCAATTACTGATCAACTACAGTTCAATAATAAGGCGCATTTTCACACAAGCAACCGGAAGGAAGAATCTCCTAGATTTGGCAATAGTGAAAGAGGAGGACCTTACAGCCATAGGTCAGGTTATCTTGAGCAGCAACAACCTGTATGGCGACCTCAAAGAGGACTCCCCGAGCGTGCTGTGACTGTTCTTAGAGCCTGGCTCTTTGAACACTTTCTGCATCCTTATCCTACTGATACAGATAAAATAATGTTGGCTAAACAAACTGGTCTGTCGCGTAGCCAGGTGTCAAATTGGTTCATAAATGCAAGAGTAAGGCTTTGGAAACCAATGGTGGAAGAAATTCACATGCTAGAAACAAGGCAAGCTCCAAAAGATTCACAGCAAAATGAAGAAAATTGTAGGAACAAATCAAGTGATCATCATCATCATTTGCCTTCAGATACTTCTCTAGTTTCCGAGAATCCATCTACATCGACAGATAAGTTTCATGACTCCGGTTACAAGCGCGCCGTAAATGAAATTCCTAACATACCAATTAGGAGTCAAGGACAACATCAACAACAACAACAACAACAAATGAGTCTACCTTTTCAACATGTGGGTGTTGGAATGAATATTGTTGGTAGTGGAAGCAATAATAGCAATCATAGTAGTAATAATAATAGTAATGTGTCATTGACACTAGGGCTTTATCAAAATCATGGGATTGGTTTAGCTGAACCATTTCCTTTAAGTGCAGCTCAACGATTTGGTCTTGGCCTTGAAACCAATAATGAAGGTAATTATGTTATGAGTGGTTTTGAATCACAAAATAGGCATTTTGGAAGAGATGTAATTGGTGGGCAAATGTTTCATGACTTTGTAGGATGA 1806 0.3715 MASDEGFEGYHVPQQSRRDKLRVVVAQNQQPHETLLPFYDSSSFITNFTNQQGLKHNSCSSSNSIKDLECSNLMMRFSREDQGKRVMNISSSNPYFETLNNNQGNNNNPFLYQAQNIQNLRQFDEQHSSTSTMMLNNHEPLSLSLSSNKSVSSNLPLELNLQRYGSMIYGGGGVIQGLVEGGGSGGSVPFTGYASVLKDSRFLKPAQELLEEMCDVGNLGVCGEKVVVVADSSLMMESPLERLSEEDPFGDGRNKSRLLTMLDEVYKRYRQYYQQMQSVVTSFEYVSGLNNAAPYASLAIKAMSKHFRCLKKAITDQLQFNNKAHFHTSNRKEESPRFGNSERGGPYSHRSGYLEQQQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTDKIMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQAPKDSQQNEENCRNKSSDHHHHLPSDTSLVSENPSTSTDKFHDSGYKRAVNEIPNIPIRSQGQHQQQQQQQMSLPFQHVGVGMNIVGSGSNNSNHSSNNNSNVSLTLGLYQNHGIGLAEPFPLSAAQRFGLGLETNNEGNYVMSGFESQNRHFGRDVIGGQMFHDFVG* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0522 601 CDD homeodomain 361 422 IPR001356 GO:0003677
Mtr4g0522 601 Pfam Homeobox KN domain 378 417 IPR008422 GO:0003677|GO:0006355
Mtr4g0522 601 ProSiteProfiles 'Homeobox' domain profile. 358 421 IPR001356 GO:0003677
Mtr4g0522 601 Gene3D - 364 426 - -
Mtr4g0522 601 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 25 575 - -
Mtr4g0522 601 Pfam Associated with HOX 196 315 IPR006563 -
Mtr4g0522 601 MobiDBLite consensus disorder prediction 325 352 - -
Mtr4g0522 601 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 25 575 - -
Mtr4g0522 601 SMART prehox3 191 316 IPR006563 -
Mtr4g0522 601 MobiDBLite consensus disorder prediction 431 479 - -
Mtr4g0522 601 SMART HOX_1 361 425 IPR001356 GO:0003677
Mtr4g0522 601 MobiDBLite consensus disorder prediction 431 459 - -
Mtr4g0522 601 SUPERFAMILY Homeodomain-like 363 428 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0522 Mtr-Chr4 6552026 6558347 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0522 129 601 Homeobox Transcription Factor Family AT5G02030 47.251 1.09e-113 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Mtr4g0522 POX 5.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0522 - - cam:101498314 840.491