Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0520 ATGGAACCAGAACAACAACCACCAACCCTCACGGCGTTGCACGACGGAAGCGGCGACGAAGGTTTAGCCGCATTAGGCGAAGGCGGCGAAGGAAGTAGCGGCAGCAAAGTGAAAGGTCCTTGGTCTCCTGAAGAAGACGCCATTCTCAGTCGTCTTGTTAGTCAGTTCGGTGCTAGAAACTGGAGTTTGATTGCTCGTGGAATTGCTGGAAGATCGGGAAAGTCGTGCCGGTTGCGATGGTGTAATCAACTTGATCCTTCTGTTAAACGGAAACCCTTTACTGATGAGGAAGACCGGATCATAGTTGCTGCTCATGCAATCCATGGAAACAAATGGGCAGCCATTGCTAGGCTTCTGCCAGGAAGAACAGATAATGCCATTAAGAACCACTGGAATTCTACTCTGAGGCGTCGGGGAATTGGGGGAGTTGAACATGATAATACTAAGTTAGAATCTGGTAACATGGGGGGAAATATTAGCTTGGAGAAAGCCAAAGCATCATCTGAAGAAACTCTATCATGTGGAGATGTTAATTCTTTGAAATCCTCAGAAGGAAGAGATGTTAGTTCTATGGAGAATGTGGATGATAAAAATGAAGACAAAGCAAGGACTGATGTTCAATTATACCATGAAGTCAGGGATCCACCAACCCTTTTTAAACCAGTAGCACGTGTAAGTGCTTTTAACGCGTATAACGCTTTCAATGGTTCACAGCCTTCAACATCAGTTCCAAGACCTGTTCCAATGCAAGGACCTATTTTACATTCACCAAAATCAGATGTGGAAATTTGTAAAATGCTTAACGGAACTATTGTCGACCGTTCAGTGCCTAATCAGTGTGGTCATGGATGCTGTTCATCTCTAAATGGTAACAGCTCCAAAAGCTCTTTGTTGGGACCAGACTTCATTGAATATTCAGAACCTCAATCTTTCACTAGTTTTGAGTTGGCTGCAATAGCTACAGACATTAGTAACCTTGCTTGGCTTAAAAGTGGATTGGAGAACAGTAGTGTCAAAATGATGGGTGATACTGCCGGCAGGGTTAATATCTAA 1053 0.4387 MEPEQQPPTLTALHDGSGDEGLAALGEGGEGSSGSKVKGPWSPEEDAILSRLVSQFGARNWSLIARGIAGRSGKSCRLRWCNQLDPSVKRKPFTDEEDRIIVAAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLRRRGIGGVEHDNTKLESGNMGGNISLEKAKASSEETLSCGDVNSLKSSEGRDVSSMENVDDKNEDKARTDVQLYHEVRDPPTLFKPVARVSAFNAYNAFNGSQPSTSVPRPVPMQGPILHSPKSDVEICKMLNGTIVDRSVPNQCGHGCCSSLNGNSSKSSLLGPDFIEYSEPQSFTSFELAAIATDISNLAWLKSGLENSSVKMMGDTAGRVNI* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0520 350 MobiDBLite consensus disorder prediction 170 187 - -
Mtr4g0520 350 SMART sant 37 86 IPR001005 -
Mtr4g0520 350 SMART sant 89 137 IPR001005 -
Mtr4g0520 350 SUPERFAMILY Homeodomain-like 36 131 IPR009057 -
Mtr4g0520 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 139 IPR017930 -
Mtr4g0520 350 PANTHER - 16 333 - -
Mtr4g0520 350 Pfam Myb-like DNA-binding domain 41 98 - -
Mtr4g0520 350 CDD SANT 92 135 IPR001005 -
Mtr4g0520 350 Gene3D - 37 89 - -
Mtr4g0520 350 ProSiteProfiles Myb-like domain profile. 85 135 IPR001005 -
Mtr4g0520 350 ProSiteProfiles Myb-like domain profile. 33 84 IPR001005 -
Mtr4g0520 350 MobiDBLite consensus disorder prediction 1 41 - -
Mtr4g0520 350 MobiDBLite consensus disorder prediction 170 201 - -
Mtr4g0520 350 CDD SANT 40 82 IPR001005 -
Mtr4g0520 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 35 84 IPR017930 -
Mtr4g0520 350 Gene3D - 92 138 - -
Mtr4g0520 350 PANTHER MYB PROTEIN-RELATED 16 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0520 Mtr-Chr4 6508203 6514231 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0520 25 348 MYB Transcription Factor Family AT3G09230 49.850 2.67e-100 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr4g0520 Myb_DNA-bind_6 1.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0520 K09422 - gmx:100811740 478.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g0520 4 6508203 6514231 Mtr4g0520 4 6508203 6514231 ECH