Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0420 ATGGGTGTAGATTACTATAAAGTCCTTCAGATAGATCGAAATGCAAAAGATGATGATCTCAAGAAAGCTTATCGGAAACTTGCTATGAAATGGCATCCTGATAAGAACCCTAATAACAAGAAAGATGCTGAAGCCAAATTCAAGACAATCTCTGAAGCTTATGATGTTTTGAGTGATCCACAAAAGAGAGCTGTGTATGATCAATATGGTGAGGAGGGGTTGAAGGGGCAGATGCCTCCCCCAGGTGCAGGTGGGTTTTCTGACGGTGGTGATGGTGGGCCGACGATGTTCCGTTTCAACCCGAGAAGTGCAGATGACATATTTTCCGAGTTCTTCGGGTTTCAAAGACCATTTGGCGGTGGAATGGGTGATATGGGTGGTCATCCTGGTGCATCTGGCTTTCCGAGGGGAATGTTTAGGGATGACCTTTTCTCTTCTTTTAGGAATTCGGCCGGTGAAGGATCTGCCAATGTGATGAGAAAAAGTGCACCGATTGAGAGAACATTGCCTTGCAGTTTGGAGGATTTGTATAAAGGGACCACCAAAAAAATGAAGATTTCCAGGGATGTTACTGATTCTAGTGGGAAGCCTACTACAGTTGAGGAAATTCTAACAATTGAGATCAAGCCAGGTTGGAAGAAAGGAACAAAGATTACTTTTCCGGAGAAGGGAAATGAACAGAGAGGACTTATACCTGCAGACCTTGTTTTTATTATCGACGAGAAGCCTCATACTGTCTTCAAGAGGGATGGCAATGATCTTGTTGTTACGCAGAAGATCTCTCTTGTAGAAGCTCTGACAGGTTACACTGCACAAATAACTACCCTTGATGGGAGGAATCTTACGGTCCCCGTCAACACCATCATTAGTCCATCTTATGAAGAAGTTATTAAAGGAGAGGGTATGCCAATTCCTAAGGAACCTTCCAAAAAGGGAAACTTGAGAGTCAAGTTCAACGTCAAGTTTCCATCGAGACTTACATCAGAGCAGAAGACCGGCATCAAGCGATTATTGACATCTTCGTAA 1026 0.4347 MGVDYYKVLQIDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKTISEAYDVLSDPQKRAVYDQYGEEGLKGQMPPPGAGGFSDGGDGGPTMFRFNPRSADDIFSEFFGFQRPFGGGMGDMGGHPGASGFPRGMFRDDLFSSFRNSAGEGSANVMRKSAPIERTLPCSLEDLYKGTTKKMKISRDVTDSSGKPTTVEEILTIEIKPGWKKGTKITFPEKGNEQRGLIPADLVFIIDEKPHTVFKRDGNDLVVTQKISLVEALTGYTAQITTLDGRNLTVPVNTIISPSYEEVIKGEGMPIPKEPSKKGNLRVKFNVKFPSRLTSEQKTGIKRLLTSS* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0420 341 SUPERFAMILY HSP40/DnaJ peptide-binding domain 246 332 IPR008971 GO:0006457|GO:0051082
Mtr4g0420 341 Gene3D - 244 324 - -
Mtr4g0420 341 SUPERFAMILY HSP40/DnaJ peptide-binding domain 165 244 IPR008971 GO:0006457|GO:0051082
Mtr4g0420 341 Gene3D - 164 242 - -
Mtr4g0420 341 CDD DnaJ 4 59 IPR001623 -
Mtr4g0420 341 SMART dnaj_3 3 62 IPR001623 -
Mtr4g0420 341 Gene3D DnaJ domain 3 122 IPR036869 -
Mtr4g0420 341 MobiDBLite consensus disorder prediction 73 93 - -
Mtr4g0420 341 Pfam DnaJ domain 4 67 IPR001623 -
Mtr4g0420 341 Pfam DnaJ C terminal domain 165 323 IPR002939 -
Mtr4g0420 341 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Mtr4g0420 341 PRINTS DnaJ domain signature 6 24 IPR001623 -
Mtr4g0420 341 PRINTS DnaJ domain signature 24 39 IPR001623 -
Mtr4g0420 341 PRINTS DnaJ domain signature 42 62 IPR001623 -
Mtr4g0420 341 PRINTS DnaJ domain signature 62 81 IPR001623 -
Mtr4g0420 341 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Mtr4g0420 341 SUPERFAMILY Chaperone J-domain 3 98 IPR036869 -
Mtr4g0420 341 PANTHER BNAANNG28460D PROTEIN 1 340 - -
Mtr4g0420 341 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 340 - -
Mtr4g0420 341 CDD DnaJ_C 163 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0420 Mtr-Chr4 5063530 5067437 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0420 5 69 C2H2 Transcription Factor Family AT1G74250 39.130 2.12e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0420 K09510 - nnu:104594898 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g0420 4 5063530 5067437 Mtr4g0420 4 5063530 5067437 ECH