Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0419 ATGGAAATGGCGTCAAGTCCTCGCACCGTTGAAGAGATCTTCAAAGATTTCAGTTCTCGTAGAGATGGTATCGTTCGTGCTTTAACTCAAGATGTTGATGAATTTTATGCACTCTGTGATCCAGATAAGGACAATTTGTGTCTCTATGGACATACAAATGAATCATGGGAAGTGACTCTTCCTGCTGAGGAAGTTCCACCTGAGCTTCCAGAGCCAGCCCTTGGAATCAACTTTGCAAGGGATGGCATGAACCGTAGGGACTGGCTTTCTCTAGTTGCTGTGCACAGTGATTCATGGTTGCTTTCTGTGGCTTTTTATCTTGGAGCTCGTCTTAACCGCAACGAAAGGAAACGTTTATTTAGCTTGATCAATGAGCTTCCAACTGTGTTTGAAGTTGTAACTGACAGGAAGCCAATAAAGGACAAGCCCACTGTAGATAGTGGAAGCAAATCTCGGGGAAGCACCAAGAGATCAAGTGATGGACAAGTTAAAAGCAACCCAAAGTTGGTCGATGATCAAGGTTATGAGGAGGAGGAAGACGAGCATAGTGAAACCCTTTGTGGGAGCTGCGGTGGAAACTACAACGCGGATGAATTTTGGATTGGCTGTGATATTTGTGAGAGGTGGTACCATGGAAAATGTGTGAAGATTACTCCTGCTAAAGCTGAGAGCATAAAGCAATACAAGTGCCCATCATGCAGCATCAAGAGGGGCAGGCCCTAA 723 0.4495 MEMASSPRTVEEIFKDFSSRRDGIVRALTQDVDEFYALCDPDKDNLCLYGHTNESWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINELPTVFEVVTDRKPIKDKPTVDSGSKSRGSTKRSSDGQVKSNPKLVDDQGYEEEEDEHSETLCGSCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQYKCPSCSIKRGRP* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0419 240 CDD PHD_AL_plant 186 236 IPR044104 -
Mtr4g0419 240 SMART PHD_3 186 234 IPR001965 -
Mtr4g0419 240 ProSitePatterns Zinc finger PHD-type signature. 187 233 IPR019786 -
Mtr4g0419 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 234 IPR013083 -
Mtr4g0419 240 PANTHER CPG BINDING PROTEIN 3 239 IPR045104 GO:0006355|GO:0042393
Mtr4g0419 240 Pfam PHD-finger 187 234 IPR019787 -
Mtr4g0419 240 MobiDBLite consensus disorder prediction 140 176 - -
Mtr4g0419 240 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 3 239 - -
Mtr4g0419 240 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Mtr4g0419 240 ProSiteProfiles Zinc finger PHD-type profile. 184 236 IPR019787 -
Mtr4g0419 240 SUPERFAMILY FYVE/PHD zinc finger 175 238 IPR011011 -
Mtr4g0419 240 MobiDBLite consensus disorder prediction 148 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0419 Mtr-Chr4 5054920 5058542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0419 4 239 Alfin-like Transcription Factor Family AT5G05610 77.637 7.81e-121 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Mtr4g0419 Alfin 1e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0419 - - gmx:100782478 450.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g0419 4 5054920 5058542 Mtr4g0419 4 5054920 5058542 ECH
Mtr7g1650 7 31950404 31953597 Mtr4g0419 4 5054920 5058542 PCT