Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0412 ATGGTGATGGGAGAGATGCGCAAGTCTTTCAAGGATTCTCTTAAAGCTCTTGAAGCTGATATTCAATTTGCCAATACACTTGCTTCTGATTATCCAAGTGAAACTGATGGTGCCCGCTTTCAAATGAGATTATCTTATAGCCCAGCTGCTCAATTTCTCCTTTTTATGTTTAAGTGGACTGATTGCCATCTTGCCGGAGCCTTAGGATTGCTTAGAGTTCTCGTATACAAGACATTTGAGGATGGGAAGACAACCATGTCCGTATATGAAAGAAAAGCCAGTCTAAAGGAGTTCTATGGTGTGATATTTCCCTCTTTATTACAACTTCAGAGAGGAATCACTGATGTAGAAGAGAGGAAACAGAAGGATTTGTGTGCTACAAAATACAAGCCTAAAGATGTGATTGGAAAAGGAAAGCTATCTGAAATTGATTTAGAGAGAGAAGAAGAATGTCCGATTTGTATGGAAATGAACAACAAGGTTGTGTTACCCAATTGCTACCACTCTTTGTGTATGAGATGCTATAATGACTGGCATACAAGATCTCAATCTTGCCCTTTCTGTCGCGACAGTCTTAAAAGAGTAAACTCTAGTGACCTTTGGATCTACATGAGCAACAGTGAGATACAAGATTTGGAATCAATCAACAAGGAGAATTTAAAAAGGTTATTTATGCGCATTGACAAGTTGCCTCTGATTTCACCGATTTCACCGGATCAAATATTAATCTCTTATCATCAAGACTTCTGA 750 0.3853 MVMGEMRKSFKDSLKALEADIQFANTLASDYPSETDGARFQMRLSYSPAAQFLLFMFKWTDCHLAGALGLLRVLVYKTFEDGKTTMSVYERKASLKEFYGVIFPSLLQLQRGITDVEERKQKDLCATKYKPKDVIGKGKLSEIDLEREEECPICMEMNNKVVLPNCYHSLCMRCYNDWHTRSQSCPFCRDSLKRVNSSDLWIYMSNSEIQDLESINKENLKRLFMRIDKLPLISPISPDQILISYHQDF* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0412 249 SMART ring_2 151 188 IPR001841 -
Mtr4g0412 249 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
Mtr4g0412 249 SUPERFAMILY RING/U-box 140 194 - -
Mtr4g0412 249 Pfam Zinc finger, C3HC4 type (RING finger) 148 194 - -
Mtr4g0412 249 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Mtr4g0412 249 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 4 234 - -
Mtr4g0412 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 199 IPR013083 -
Mtr4g0412 249 PANTHER RING FINGER PROTEIN 41, 151 4 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0412 Mtr-Chr4 4949745 4953665 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0412 95 193 C3H Transcription Factor Family AT5G01960 29.808 1.41e-07 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g0412 4 4949745 4953665 Mtr4g0412 4 4949745 4953665 ECH