Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0394 ATGTCTTCCCCAACAAGTTCCTTTTCTGATGAAGATTTGTTTAATATTGATTCACATTCAGACAGTTCTGACACCGAAGAATTGCACAGTCCTCAGGTTCCTTTTGATGACTTGGATCCTGATATGAACATAGACGCTGATGACATGTTCGCTCCAAAAGATCGGTTTGATATTCATAGTATAAGAAAGTACGATGTGTTCTTGAGTTTTAGAGGCGAAGACACTCGCGCATCATTCACTTCACATCTCTCTACATCTCTTCAAAGCTCTGGAATTATCGTTTTCAAGGACGATCATTCCCTTCAAAGGGGACATCGCATCTCTAAAACACTACTACAAGCAATCCAGGAGTCGAGAATTTCTGTTGTTGTCTTCTCCAAAAACTACGCTGATTCGCAATGGTGTCTTCAAGAGTTGATGCAAATTATGGAGTGTTTTAGAACCACAAGACAGGTGGTACTGCCTGTGTTCTACGATGTACATCCCTCGGAAGTTCGTAGTCAAACAGGTGACTTTGGTAAAGCTTTTCAAAATCTTTTGAACAGAGTTTTAAAAGTGGATGAATTCATGGTGCCAAAGTGGAGAGACGCGCTTCGTAATGCTGCTGGCATTGCAGGATTTGTTGTTCTAAATTCCAGGAACGAAAGTGAGGTCATCAAGGATATTGTTGAAAATGTTGCACGTTTGCTTGACAAGACTGACTTGTTCATTGCTGATCATCCGGTAGGAGTCGAATCTCGAGTACAAGATATGATTCAACTTCTAGACACTCAACTATCAAATAAAGTTCTACTGCTAGGAATGTGGGGGATGGGTGGGATTGGGAAAACCACAATTGCGAAGGCCATTTACAATAAAATTGGCCGCAAATTTCAAGGTAGGAGCTTTCTTGCAAATATTAGGGAGGTTTGGGAGAAAGATTATGGTCAAGTGAATCTACAAGAACAACTTATGTATGATATTTTCAAAGAAACCACATCCAAGATACAAAACATAGAAGCAGGAAAATATATATTAAAGGACAGACTATGTCATAAAAGAGTTCTTATTGTACTTGACGATGTTAATAAATTGGACCAACTAAATATTCTGTGTGGAAGTCGTAAATGGTTTGCTCCTGGGAGTAGAATAATCATTACAACTAGGGATAAGCATATACTGAGAAGGGATAGAGTTGACAAAACATACTCAATGAAAGAAATGGATGAAAGTGAATCTCTTGAGCTTTTTAGTTTGCATGCATTCAAGCAAACGAGTCCCACAGAAGATTTTTCTGAAATTTCCAGAAATGTTGTTAAGTATTCTGGGGGATTACCGCTAGCTCTTGAAGTCCTCGGGTCCTATTTGTTTGATAGGGAGATATTAGAGTGGATTTGTGTATTGGAGAAACTCAAAATAATTCCCAATGATCAAGTACATAAGAAGTTAAAAATAAGCTATGATGGTTTAAATGATGATACTGAGAAATCAATATTCCTTGACATAGCTTGTTTCTTTATTGGGATGGACCGAAATGATGTTATTCAAATATTAAATGGCTGTGGACTTTTCGCTGAAATTGGAATAAGTGTCCTTGTTGAGCGAAGCCTTGTAACGGTCGATGGTAAGAACAAGCTTGGCATGCATGATTTGCTTCGAGATATGGGAAGAGAAATCATTCGTGAGAAATCACCAATGGAGCCTGAGGAACGTAGTAGGTTGTGGTTTCATGAGGATGTGCTTGATGTATTGTCAGAACATACTGGAACAAAAACTGTTGAGGGATTGACTTTGAAGCTGCCAGGTCGTAGTGCACAACGTTTTAGTACCAAAGCATTTAAGAAGATGAAGAAACTCAGATTGCTTCAACTTTCTGGCGCACAACTTGATGGAGATTTTAAATATCTTTCCAGAAAGTTGAGATGGCTGCACTGGAATGGATTTCCTTTAACATGCATACCTTCAAAGTTCCGTCAAAGAAATATAGTTTCCATTGAGTTAGAAAACAGCAATGTCAAACTTGTATGGCAACAGATGCAGAGGATGGAGCAGTTGAAAATTCTCAATCTTAGTCATTCTCATTATCTAACACAGACCCCTGATTTTTCATACTTGCCTAATCTTGAAAACCTAGTACTCAAAGATTGTCCGAGGCTGTCTGAGGTATCCCATACAATTGGACATCTTAAGAAAGTTCTTTTGATAAATTTGAAAGATTGCATTAGCCTTTGTAACCTTCCAAGAAACATCTATACGTTGAAGTCTCTGAAAACTCTCATTCTATCAGGATGTTTAAAGATTGACAAGTTGGAAGAGGACTTGGAACAAATGGAATCTTTAACCACTCTCATGGCAGATAACACTGGTATAACAAAAGTGCCCTTTTCAGTAGTAAAGTCAAAAAGCATTGGCTATATCTCTTTGTGTGGGTATGAAGGATTCTCCCGTGATGTGTTTCCTTCTATAATTTGGTCTTGGATGGTACCAACAAATAATGTCTCACCAGCTGTTCAAACAGCTGTTGGAATGTCACCCCATGTTTCTTTGAATGTATCATCTGTTTTCAAAGTCCTTCCTAAACTTCAATGCCTTTGGTTTGAGTGTGGATCAGAACTTCAACTTTCACAAGACACAACAAGAATTTTGAATGCATTATGTGCAGCAAATTCTAAGGAATTGAAATCAACTGCAACTACATCACAAGTATCAGATGTGAAGACTTCACTAATTGAATGTCGCAGTCAAGTGCAAGATTCACCAGCAAAAAATTGCATGAAATCTCTTCTGATTCAAATGGGAACGAGTTGCCTAATCTCCAATATTCTCAAAGAGAGGATCTTACAGAATTTGACTGTCGATGGGCGTGGTAGTTTTTTGCTCCCCGGTGATAATTACCCAAATTGGTCAACTTTCAACTCCAAAGGTTATTCTGTAATCTTTGAAGTCCCTCAAGTGGAAGGACATAGCTTGAAGACAATAATGTGCATTGTCTATTCTTCAAGCCCAGATGACATAACATCAGACATCAGATGGCCTTAA 3018 0.3834 MSSPTSSFSDEDLFNIDSHSDSSDTEELHSPQVPFDDLDPDMNIDADDMFAPKDRFDIHSIRKYDVFLSFRGEDTRASFTSHLSTSLQSSGIIVFKDDHSLQRGHRISKTLLQAIQESRISVVVFSKNYADSQWCLQELMQIMECFRTTRQVVLPVFYDVHPSEVRSQTGDFGKAFQNLLNRVLKVDEFMVPKWRDALRNAAGIAGFVVLNSRNESEVIKDIVENVARLLDKTDLFIADHPVGVESRVQDMIQLLDTQLSNKVLLLGMWGMGGIGKTTIAKAIYNKIGRKFQGRSFLANIREVWEKDYGQVNLQEQLMYDIFKETTSKIQNIEAGKYILKDRLCHKRVLIVLDDVNKLDQLNILCGSRKWFAPGSRIIITTRDKHILRRDRVDKTYSMKEMDESESLELFSLHAFKQTSPTEDFSEISRNVVKYSGGLPLALEVLGSYLFDREILEWICVLEKLKIIPNDQVHKKLKISYDGLNDDTEKSIFLDIACFFIGMDRNDVIQILNGCGLFAEIGISVLVERSLVTVDGKNKLGMHDLLRDMGREIIREKSPMEPEERSRLWFHEDVLDVLSEHTGTKTVEGLTLKLPGRSAQRFSTKAFKKMKKLRLLQLSGAQLDGDFKYLSRKLRWLHWNGFPLTCIPSKFRQRNIVSIELENSNVKLVWQQMQRMEQLKILNLSHSHYLTQTPDFSYLPNLENLVLKDCPRLSEVSHTIGHLKKVLLINLKDCISLCNLPRNIYTLKSLKTLILSGCLKIDKLEEDLEQMESLTTLMADNTGITKVPFSVVKSKSIGYISLCGYEGFSRDVFPSIIWSWMVPTNNVSPAVQTAVGMSPHVSLNVSSVFKVLPKLQCLWFECGSELQLSQDTTRILNALCAANSKELKSTATTSQVSDVKTSLIECRSQVQDSPAKNCMKSLLIQMGTSCLISNILKERILQNLTVDGRGSFLLPGDNYPNWSTFNSKGYSVIFEVPQVEGHSLKTIMCIVYSSSPDDITSDIRWP* 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0394 1005 Gene3D - 235 394 IPR027417 -
Mtr4g0394 1005 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 69 1001 IPR044974 GO:0006952
Mtr4g0394 1005 Gene3D - 60 234 IPR035897 -
Mtr4g0394 1005 Gene3D Ribonuclease Inhibitor 580 883 IPR032675 -
Mtr4g0394 1005 PRINTS Disease resistance protein signature 265 280 - -
Mtr4g0394 1005 PRINTS Disease resistance protein signature 342 356 - -
Mtr4g0394 1005 PRINTS Disease resistance protein signature 435 449 - -
Mtr4g0394 1005 PRINTS Disease resistance protein signature 673 689 - -
Mtr4g0394 1005 SMART AAA_5 262 402 IPR003593 -
Mtr4g0394 1005 Gene3D - 400 484 IPR042197 -
Mtr4g0394 1005 Coils Coil 760 780 - -
Mtr4g0394 1005 SUPERFAMILY Toll/Interleukin receptor TIR domain 62 207 IPR035897 -
Mtr4g0394 1005 Pfam NB-ARC domain 245 469 IPR002182 GO:0043531
Mtr4g0394 1005 MobiDBLite consensus disorder prediction 14 34 - -
Mtr4g0394 1005 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 232 495 IPR027417 -
Mtr4g0394 1005 SUPERFAMILY L domain-like 590 868 - -
Mtr4g0394 1005 SUPERFAMILY "Winged helix" DNA-binding domain 471 577 IPR036390 -
Mtr4g0394 1005 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 69 1001 - -
Mtr4g0394 1005 CDD AAA 242 393 - -
Mtr4g0394 1005 MobiDBLite consensus disorder prediction 1 39 - -
Mtr4g0394 1005 Pfam TIR domain 63 228 IPR000157 GO:0007165
Mtr4g0394 1005 ProSiteProfiles TIR domain profile. 62 230 IPR000157 GO:0007165
Mtr4g0394 1005 SMART till_3 63 204 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0394 Mtr-Chr4 4595850 4610260 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0394 52 790 WRKY Transcription Factor Family AT4G12020 31.440 1.28e-91 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0394 - - cam:101512894 1325.46