LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr4g0392	ATGTCTTACCCAACAAGTTCCTCTTCATATGATTTACAGAGAAGAAGGACACTGCTTCTTGATCTGAACCTCACTCCATTTGAGAACGATTTGGCTCTAACAAAAAAGTATGACGTGTTTTTGAGTTTCCGAGGAGAAGACACTCGCGCATCATTCATTTCACATCTCACATCATCTCTTCAGAACGCCGGAATCCTCATTTTCAAGGATGATCAGTCGCTTCAAAGAGGAGATCACATATCCCCATCGCTAGTTCACGCAATTGAATCTTCTAAAATTTCTGTTATAGTCTTCTCAAAAAACTACGCCGATTCCAAGTGGTGTCTTCAAGAGTTGTGGCAAATAATGGTGCGTCACAGAACCACAGGCCAGGTTGTACTGCCTGTGTTCTACGATGTCGATCCTTCTGAAGTTCGTCATCAAACTGGTGAGTTTGGTAAATCATTTCTAAATCTATTGAACAGAATTTCACATGAGGAGAAATGGATGGCGTTAGAGTGGAGAAATGAGCTTCGTGTTGCGGCTGGCCTTGCTGGATTTGTTGTCCTAAATTCCAGGAACGAAAGTGAGGTTATCAAGGATATTGTTGAAAATGTTACACGTTTACTGGACAAGACAGACTTGTTCGTTGCTGATAATCCTGTGGGTATCGATTCTCGAGTGCAAGATATGATTCAACTTCTAGACACTCAACAAACAAATGATGTTCTACTACTAGGGATGTGGGGGATGGGTGGAATTGGAAAAACCACCGTTGCAAAGGCCATTTACAATAAAATTGGTCGCAATTTTGAAGGTAGGAGCTTTATTGCAAATATTAGGGAGGTTTGGGGGAAAGATTGTGGTCAAGTGAATCTACAAGAACAACTTATGTATGATATTTTTAAAGAAACCACAACCAAGATACAGAACGTTGAATCAGGAATATCTATATTAAATGGAAGACTCTGTCATAAAAGAGTACTTCTTGTACTTGACGATGTGAATAAACTGGACCAGCTAAATGCTTTGTGTGGAAGTTGTAAATGGTTTGCTCCAGGTAGTAGAATAATCATCACAACTAGAGATAAGCATATACTTAGAGGAAATAGGGTTGACAAAATATACATAATGAAAGAAATGGATGAAAGTGAATCTCTTGAGCTTTTTAGTTGGCATGCATTCAAGCAAGCGAGGCCTAGCAAAGATTTTTCAGAAATTTCCACAAATGTAGTTCAGTATTCTGGGAGATTGCCGCTAGCTCTTGAAGTCCTTGGGTCCTATTTGTTTGATAGGGAGGTAACAGAGTGGATTTGTGTATTGGAGAAACTCAAAAGAATTCCCAATGATCAAGTACATCAGAAGTTAAAAATAAGCTACGATGGCTTAAATGATGATACAGAGAAATCAATATTCCTTGACATTGCTTGTTTCTTTATTGGGATGGATCGAAATGATGTCATTCATATATTAAATGGTTCTGGATTTTTCGCAGAAATTGGAATAAGTGTCCTTGTTGAGAGAAGCCTTGTAACGGTTGATGATAAGAACAAGCTTGGCATGCATGATTTGCTGCGAGATATGGGAAGGGAAATCATTCGTGAGAAATCACCAATGGAGCCTGAGGAACGTAGTAGGTTGTGGTTTCATGATGATGTGCTTGATGTATTGTCAGAACATACTGGAACAAAAGCTGTTGAGGGACTGACTTTGAAGATGCCATGTCATAGTGCACAACGATTTAGTACTAAAACATTTGAGAACATGAAGAAACTCAGATTGCTGCAACTTTCTGGTGTACAACTTGATGGAGATTTTAAATATATTTCAAGAAATTTAAAATGGCTGCACTGGAATGGATTTCCTTTAAGATGCATACCTTCAAACTTCTATCAAAGAAATATAGTTTCCATTGAGTTAGAAAACAGCAATGCTAAACTTGTGTGGAAAGAGATTCAGAGGATGGAGCAGCTGAAGATTCTAAATCTTAGTCATTCTCATCATTTGACACAGACCCCTGACTTTTCATACTTGCCTAATCTTGAAAAGCTAGTGCTCGAAGATTGCCCAAGGCTGTCTCAGGTTTCCCATAGCATTGGACATCTCAAAAAAGTTGTTTTGATAAATTTGAAAGATTGTATTAGCCTTTGTAGCCTTCCAAGAAACATCTATACGTTGAAAACTCTGAATACTCTCATTCTATCGGGATGTTTAATGATTGACAAGTTGGAAGAGGACTTGGAACAAATGGAATCTTTAACCACCCTGATTGCAAATAATACTGGTATAACAAAAGTTCCCTTTTCATTAGTAAGGTCAAAAAGCATTGGATTTATTTCTCTGTGTGGATATGAAGGATTCTCACGTGATGTGTTTCCTTCTATCATTTGGTCTTGGATGTCACCAAATAATCTGTCACCCGCTTTTCAAACAGCTTCTCACATGTCATCCCTTGTGTCTTTAGAGGCATCAACTTGTATTTTCCACGATCTATCATCTATTTCCATTGTCCTTCCAAAGCTTCAAAGCCTTTGGCTGACATGTGGATCAGAACTTCAACTATCACAAGATGCAACACGAATTGTGAATGCTTTAAGTGTAGCAAGTTCTATGGAATTGGAATCAACTGCAACTACATCACAAGTACCAGATGTGAATTCATTAATTGAATGTCGCAGTCAAGTGAAAGTTTCAACCACTCCAAATTCCATGAAATCTCTTTTATTTCAAATGGGAATGAACTCCCTAATCACCAATATTCTGAAAGAGAGGATCTTAAAGAATTTGACTATCGATGAGCATGGTCGTTTTTCACTCCCTTGTGATAATTACCCGGATTGGTTAGCTTTCAATTCAGAAGGTTCTTCTGTAATTTTTGAAGTCCCTCAAGTGGAAGGACGTAGCTTGAAGACAATAATGTGCATTGTCTATTCTTCAAGCCCATACGACATAACATCAGATGGCCTTGAAAATGTGTTAGTGATAAATCACACAAAGACCACCATTCAACTCTATAAGAGAGAAGCATTATCCTCCTTTGAAAATGAGGAGTGGCAGAGAGTTGTAACAAATATGGAACCTGGTGACAAGGTGGAGATTGTTGTCGTTTTTGGGAACAGTTTCATTGTGATGAAGACAGCAGTTTATCTCATATATGATGAACCAGTCGTCGAAATATTGGAGCAATGTCATACACCAGATAAGAATGTTCTTGTTGATATCGGTGATGAAAATGAATGTGCTGCCATGAGGATCTCTCGCCAAGTAGAGCCTACAGATGATTTTGAACAAAAACAGAAAAGAAGAAAAATCGACTGA	3297	0.3825	MSYPTSSSSYDLQRRRTLLLDLNLTPFENDLALTKKYDVFLSFRGEDTRASFISHLTSSLQNAGILIFKDDQSLQRGDHISPSLVHAIESSKISVIVFSKNYADSKWCLQELWQIMVRHRTTGQVVLPVFYDVDPSEVRHQTGEFGKSFLNLLNRISHEEKWMALEWRNELRVAAGLAGFVVLNSRNESEVIKDIVENVTRLLDKTDLFVADNPVGIDSRVQDMIQLLDTQQTNDVLLLGMWGMGGIGKTTVAKAIYNKIGRNFEGRSFIANIREVWGKDCGQVNLQEQLMYDIFKETTTKIQNVESGISILNGRLCHKRVLLVLDDVNKLDQLNALCGSCKWFAPGSRIIITTRDKHILRGNRVDKIYIMKEMDESESLELFSWHAFKQARPSKDFSEISTNVVQYSGRLPLALEVLGSYLFDREVTEWICVLEKLKRIPNDQVHQKLKISYDGLNDDTEKSIFLDIACFFIGMDRNDVIHILNGSGFFAEIGISVLVERSLVTVDDKNKLGMHDLLRDMGREIIREKSPMEPEERSRLWFHDDVLDVLSEHTGTKAVEGLTLKMPCHSAQRFSTKTFENMKKLRLLQLSGVQLDGDFKYISRNLKWLHWNGFPLRCIPSNFYQRNIVSIELENSNAKLVWKEIQRMEQLKILNLSHSHHLTQTPDFSYLPNLEKLVLEDCPRLSQVSHSIGHLKKVVLINLKDCISLCSLPRNIYTLKTLNTLILSGCLMIDKLEEDLEQMESLTTLIANNTGITKVPFSLVRSKSIGFISLCGYEGFSRDVFPSIIWSWMSPNNLSPAFQTASHMSSLVSLEASTCIFHDLSSISIVLPKLQSLWLTCGSELQLSQDATRIVNALSVASSMELESTATTSQVPDVNSLIECRSQVKVSTTPNSMKSLLFQMGMNSLITNILKERILKNLTIDEHGRFSLPCDNYPDWLAFNSEGSSVIFEVPQVEGRSLKTIMCIVYSSSPYDITSDGLENVLVINHTKTTIQLYKREALSSFENEEWQRVVTNMEPGDKVEIVVVFGNSFIVMKTAVYLIYDEPVVEILEQCHTPDKNVLVDIGDENECAAMRISRQVEPTDDFEQKQKRRKID*	1099

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr4g0392	1098	Gene3D	-	211	370	IPR027417	-
	Mtr4g0392	1098	Coils	Coil	733	753	-	-
	Mtr4g0392	1098	PRINTS	Disease resistance protein signature	238	253	-	-
	Mtr4g0392	1098	PRINTS	Disease resistance protein signature	315	329	-	-
	Mtr4g0392	1098	PRINTS	Disease resistance protein signature	408	422	-	-
	Mtr4g0392	1098	PRINTS	Disease resistance protein signature	646	662	-	-
	Mtr4g0392	1098	SUPERFAMILY	Toll/Interleukin receptor TIR domain	33	179	IPR035897	-
	Mtr4g0392	1098	SMART	till_3	36	177	IPR000157	GO:0007165
	Mtr4g0392	1098	SMART	AAA_5	235	375	IPR003593	-
	Mtr4g0392	1098	Gene3D	-	373	457	IPR042197	-
	Mtr4g0392	1098	ProSiteProfiles	TIR domain profile.	35	203	IPR000157	GO:0007165
	Mtr4g0392	1098	PANTHER	RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED	43	1045	-	-
	Mtr4g0392	1098	SUPERFAMILY	L domain-like	514	841	-	-
	Mtr4g0392	1098	Gene3D	-	32	210	IPR035897	-
	Mtr4g0392	1098	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	203	468	IPR027417	-
	Mtr4g0392	1098	Pfam	TIR domain	36	201	IPR000157	GO:0007165
	Mtr4g0392	1098	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	43	1045	IPR044974	GO:0006952
	Mtr4g0392	1098	Gene3D	Ribonuclease Inhibitor	556	901	IPR032675	-
	Mtr4g0392	1098	Pfam	NB-ARC domain	220	446	IPR002182	GO:0043531

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr4g0392	Mtr-Chr4	4581757	4588158	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr4g0392	34	763	WRKY Transcription Factor Family	AT4G12020	31.600	2.32e-89	314

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr4g0392	-		-	lja:Lj0g3v0331109.1	1460.28