Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0380 ATGTCAAACAATACTCCTAAATCAAAGTTTGATGTTTTTGTAAGCTTTAGGGGAAATGATGTCCGCGACGGCTTTCTTGGCAAATTGTATGAGGCTTTTATTCGAAAACAAATAAATATCTTTGTTGATTACAAACTTAAGAAAGGAGATGACATATCACATTCACTTGGTGAAGCAATTGAAGGATCATCCATTTCATTGGTCATATTCTCTGAAAACTATGCTTCTTCACATTGGTGTTTAGAAGAACTTGTAAAAATAATTGAGTGCAGAGAGAAATATGGACAACTTGTAATACCTATTTTCTACGAGGTAGATCCTACAAATGTACGATATCAAAAGAAGAGTTATGAAAATGCATTTGTTAAACTTGAAAAAAGGTATAATTCATCTGAGGTTAAGATATGGAGACACACTTTGAAAATATCAGCTAATTTGGTGGGATTTACATCATCAAGTTTCCGGAATGATGCTGAGCTGCTGGAAGAAATCACCAATTTTGTGTTGATGAGTTTGGGTAAGTACTCAAAAGGACTTATTGGAATGGACAAACCAATTGCACATTTGAATTCATTGTTAAACAAAGAGTCGGGAAAGGTCCGTGTTATTGGAATTTGGGGTATGGGCGGTATTGGCAAGACAACTATTGCAAAAGAATTATTTGACCAAATTTGTTCTGAATATGATGGTTGTTGTTTTATGTCAAATGTGAGTTTGGGATTACAAAGTCGTGGAATAACATTTTTAAAAGAAATGCTTTTTTCTAACCTATTAAATGAAGATGTGAAAATCGATTCATCAAATGGGTTGTCTAATAATATTCATAGAAGGATTGACCGTATGAAGGTTCTTATTGTTCTTGATGATATTAAGGAAGAAGGTCTGCTAGAGATGTTATTTGGAACTCTTGATTGGTTTCGATCCGATAGTAGAATCATTGTAACATCTAGAGATAAGCAAGTACTTATTGCTAATGAAGTTGATGATGATGATGTATATGAAGTTGGGGTATTGAATTCTAGCGATGCACTTGCGCTTTTCAATTTGAATGCCTTTAAAGAAAGTCATCTTGAAATTAAGTACTACGATCTATCAAAGAAGGTGGTCGATTATGCCAAAGGAATTCCATTAGTTCTTAAAGTTTTGGGTCATATGTTTCGTGGAAAACATAATAAGAAAACGTGGGTTTATCAACTAGAAAAACTGGAAAAAGTGCCAATTCAAGAAATTGATAAAGTAATGAGACTCAGTTATGATGATCTTGATCTCTTAGAGCAAAAGTATTTTTTAGATATTGCATGTTTCTTCAATGGGTTGAATTTGAAAGTGGATTACATGAAACTTTTATTGAAAGATTATGAAAGTGATAATTCAGTGGCCGTTGGGTTAGAAAGGTTGAAAGATAAAGCTCTTATTACTATTTCTGAAGATAATGTAATATCTATGCATGACTTTCAACAAAAGATGGGTCGGGAGGTTGTTCGCCTAGAATCTATTAAAGACCCTAGTAAACAAAGTCGGTTATGGGATCCTGATGACATTTGCTATGTATTGGAAAATGACAAGGGTACTGATGCTATTAGAAGCATACGTGTAAACTTGTCATCAGTTTGGATGCTGAAGTTAAGCCCTCATGTATTTGCTAAGATGACCAACCTGAAATTTTTGAATTTTTTTGGTGGGTACGATAATGACTGTTTGGATCTTCTTCCTCGAGGGCTTCAATCTTTTCCAAATGATCTAAGATATCTTCGTTGGGTATGTTACCCTCTAAAATCATTCCCAGAGAACTTTTCTGCAGAGAATCTTGTTATATTGAACTTGCGTTATAGTAAAGTGGAAAAGCTTTGGTGTGGAGTACAGCCGGATCTAGTTAATTTAAAAGAAGTTAAACTATCACATTCAGGATTCTTGAAGGAGTTACCTAACTTTTCAAAAGCTGAAAATCTGAATGTATTGCATATTGAAGATTGTCCTCAGTTGGAAAGTGTCCATCCATCTATTTTCTGTCCTGGCAAGCTTGTGAAACTCTACTTGTTCACTATAAGTCACTGA 2055 0.3426 MSNNTPKSKFDVFVSFRGNDVRDGFLGKLYEAFIRKQINIFVDYKLKKGDDISHSLGEAIEGSSISLVIFSENYASSHWCLEELVKIIECREKYGQLVIPIFYEVDPTNVRYQKKSYENAFVKLEKRYNSSEVKIWRHTLKISANLVGFTSSSFRNDAELLEEITNFVLMSLGKYSKGLIGMDKPIAHLNSLLNKESGKVRVIGIWGMGGIGKTTIAKELFDQICSEYDGCCFMSNVSLGLQSRGITFLKEMLFSNLLNEDVKIDSSNGLSNNIHRRIDRMKVLIVLDDIKEEGLLEMLFGTLDWFRSDSRIIVTSRDKQVLIANEVDDDDVYEVGVLNSSDALALFNLNAFKESHLEIKYYDLSKKVVDYAKGIPLVLKVLGHMFRGKHNKKTWVYQLEKLEKVPIQEIDKVMRLSYDDLDLLEQKYFLDIACFFNGLNLKVDYMKLLLKDYESDNSVAVGLERLKDKALITISEDNVISMHDFQQKMGREVVRLESIKDPSKQSRLWDPDDICYVLENDKGTDAIRSIRVNLSSVWMLKLSPHVFAKMTNLKFLNFFGGYDNDCLDLLPRGLQSFPNDLRYLRWVCYPLKSFPENFSAENLVILNLRYSKVEKLWCGVQPDLVNLKEVKLSHSGFLKELPNFSKAENLNVLHIEDCPQLESVHPSIFCPGKLVKLYLFTISH* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0380 684 PRINTS Disease resistance protein signature 202 217 - -
Mtr4g0380 684 PRINTS Disease resistance protein signature 277 291 - -
Mtr4g0380 684 PRINTS Disease resistance protein signature 372 386 - -
Mtr4g0380 684 PRINTS Disease resistance protein signature 645 661 - -
Mtr4g0380 684 SUPERFAMILY "Winged helix" DNA-binding domain 409 519 IPR036390 -
Mtr4g0380 684 Pfam TIR domain 9 168 IPR000157 GO:0007165
Mtr4g0380 684 Coils Coil 114 134 - -
Mtr4g0380 684 Gene3D - 7 168 IPR035897 -
Mtr4g0380 684 ProSiteProfiles TIR domain profile. 8 172 IPR000157 GO:0007165
Mtr4g0380 684 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 432 IPR027417 -
Mtr4g0380 684 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 7 679 - -
Mtr4g0380 684 Pfam Leucine Rich Repeat 602 621 IPR011713 -
Mtr4g0380 684 Gene3D - 169 329 IPR027417 -
Mtr4g0380 684 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 7 679 IPR044974 GO:0006952
Mtr4g0380 684 SMART till_3 9 146 IPR000157 GO:0007165
Mtr4g0380 684 Gene3D Ribonuclease Inhibitor 524 683 IPR032675 -
Mtr4g0380 684 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 149 IPR035897 -
Mtr4g0380 684 Gene3D - 337 422 IPR042197 -
Mtr4g0380 684 SUPERFAMILY L domain-like 532 679 - -
Mtr4g0380 684 Pfam NB-ARC domain 190 420 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0380 Mtr-Chr4 4480560 4485192 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0380 10 658 WRKY Transcription Factor Family AT4G12020 31.970 1.02e-85 293