Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0312 ATGAGAAACTCATTTAGGACTTTTAACAAACACTTTACTTTCATTTCTTTTCGTAAACTTCCTCACTCTTTTGGTTACGTAACTTCTTCTTCTTCTACTCACCCGACCTTCTCTTTCTCTCAATTTCGTTCATCGTCACACTCATCATCTCCATCTTCTTCATTTATGGAGGTACTCAAAGCAATTGCAAAGCAAGACTTTGCATCCCATGGAAATGTTGCTATCAGAGCTGATCAGAAGAGTTATAGTTACATGCAAATTATCTCTTCGGCGCAGAAGATATCTAATCTCTTATGTGGAAGTAATGTCAAAGCAGGAAATCTTGGTGGAGCTCGAATAGGAATTGTAGCCAAACCCTCTGCTGAATTTGTTGCTGCAGTACTTGGGACTTGGCTTAGTGGGGGTGTTGCTGTTCCACTTGCAGTCAGCTATCCAGAAGTAGAGCTACTGTATGTGATGAATAACTCGGACACGTCTGCAATACTGAGTACTGAAGATCATAGTGAATTAATGCAAAACATTGCCAATAAAACCTCTTCTCAATTTTTTCATCTTCCACCAGTTGCTAATAAGTCGTTAGAGAAGAGCAGAGATGAACATTCACAGAATGGGAAAATTGATGCAGACGGAATTCTCCTGGAAAAATTCGAAAGATCAAGTCAAGACCCGGCACTCATTTTGTACACTAGTGGAACAACAGGTAAACCTAAGGGAGTTGTTCATACACACGGAAGCATCATTGCTCAGGTCCAATCCTTGACAAAAGCATGGGAGTACACATCTGCTGATCAGTTTTTGCATTGTCTACCACTACATCATGTCCACGGGCTTTTCAATGGTTTACTGGCCCCTCTCTATGCAGGTTCCACGGTTGAGTTTTTGCCAAAATTTAGTGTCGGCGGAATTTGGAAGAGATGGCGTGAGTCATATCCAACTGAAGGATCTAAGGCTGATGATGCTACAACTGTATTCACTGGAGTTCCAACTATGTACGCCCGATTAATACAAGGTTATCGTGCGATGGATCCTGAGCTACAAGCTGTGTCAGCATCTGCTGCAAGGAACTTGCGTTTAATGATGTGTGGGTCCTCTGCACTTCCTCAACCTGTTATGCAAGAATGGGAAGCTATCACTGGCCATCGTTTATTGGAGCGATATGGCATGACGGAATTTGTCATGGCATTGTCAAATCCATTGAAAGGTGAGCGTAAGGCAGGCACAGTCGGAAAACCATTGCCTGGTGTGCAGGTCAAGATTCTTGCAGATGAGGAGCATGGGAATGAAATTAATGAAGCCGGCGAGCTTTGCGTTAAAAGTCCATCATTGTTTAAAGAATATTGGAAACTTCCAGAGGTAACTAAGGAATCATTTACAGAAGAAGGTTTCTTTAAGACCGGAGATGCAGTTACAACAGATAAAGATGGATATTACATCATTCTAGGACGTACTAGTGCGGACATCATCAAGGCCGGTGGCTATAAGCTGTCTGCATTGGAAATCGAATCAGTTATAATAGAGCATCCAGCTGTCTCAGAATGTTGTGTCTTGGGCTTACCACACAAAGAATATGGAGAAATTGTTGGTGCAATTATCGTGCCAGAAGCTGATGTTAAACGAAAGCGAGATGAAGAGTCAAAGCCGGCTCTAAGCATAGAAGAGTTATCCACTTGGGCCAAAGATAAACTTGCACCTTACAAGATACCAACTCGTCTGATCCTTTGGGACTCACTCCCTCGCAATGCAATGGGAAAGGTAAGTAAAAAAGAGCTGAAGAAGATCCTAGCTTCAGAACAGTAA 1797 0.4235 MRNSFRTFNKHFTFISFRKLPHSFGYVTSSSSTHPTFSFSQFRSSSHSSSPSSSFMEVLKAIAKQDFASHGNVAIRADQKSYSYMQIISSAQKISNLLCGSNVKAGNLGGARIGIVAKPSAEFVAAVLGTWLSGGVAVPLAVSYPEVELLYVMNNSDTSAILSTEDHSELMQNIANKTSSQFFHLPPVANKSLEKSRDEHSQNGKIDADGILLEKFERSSQDPALILYTSGTTGKPKGVVHTHGSIIAQVQSLTKAWEYTSADQFLHCLPLHHVHGLFNGLLAPLYAGSTVEFLPKFSVGGIWKRWRESYPTEGSKADDATTVFTGVPTMYARLIQGYRAMDPELQAVSASAARNLRLMMCGSSALPQPVMQEWEAITGHRLLERYGMTEFVMALSNPLKGERKAGTVGKPLPGVQVKILADEEHGNEINEAGELCVKSPSLFKEYWKLPEVTKESFTEEGFFKTGDAVTTDKDGYYIILGRTSADIIKAGGYKLSALEIESVIIEHPAVSECCVLGLPHKEYGEIVGAIIVPEADVKRKRDEESKPALSIEELSTWAKDKLAPYKIPTRLILWDSLPRNAMGKVSKKELKKILASEQ* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0312 598 SUPERFAMILY Acetyl-CoA synthetase-like 57 596 - -
Mtr4g0312 598 CDD MCS 73 592 - -
Mtr4g0312 598 Pfam AMP-binding enzyme C-terminal domain 499 584 IPR025110 -
Mtr4g0312 598 PANTHER MALONATE--COA LIGASE-LIKE 20 596 - -
Mtr4g0312 598 Gene3D - 60 482 IPR042099 -
Mtr4g0312 598 Gene3D - 485 598 IPR045851 -
Mtr4g0312 598 ProSitePatterns Putative AMP-binding domain signature. 226 237 IPR020845 -
Mtr4g0312 598 Pfam AMP-binding enzyme 71 489 IPR000873 -
Mtr4g0312 598 PANTHER ACYL-COA SYNTHETASE 20 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0312 Mtr-Chr4 3790476 3797855 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0312 222 596 Monolignol Biosynthesis Gene Families AT4G19010 28.608 4.00e-42 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0312 K18660 - gmx:100813324 937.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g0312 4 3790476 3797855 Mtr4g0312 4 3790476 3797855 ECH