Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0277 ATGGGCGAAGAAAAGCAACAGAGTATTCCTGCTTTGCCATGGATGCGAGATCCTGTCGACGTCACTCTCACTCAGCAACTTCCTCTTCATTCCGTCCCTTCTCTCCACCCTAAGTTGAAGTCAGCTTTGGAGGACATGGGAATCTCAAACCTATTCCCAGTGCAAGTTGCAGTTTGGCACGAAACAGTTGGACCCGGCAATTTTGAGCGAGACATTTGTGTTAACTCGCCCACCGGAAGCGGCAAAACCCTCGCATACGCTCTCCCCTTGGTGCAGATGCTATCAGGCCGCGTCACCAAATGTCTCCACGCTTTAGTTGTCGTTCCCACTCGCGACCTTGCTTTACAGGTCAAACAAGTCTTTGACGCCGTTGCATCTCCGTTAGGCCTGCGTGTCGGATTAGCTGTTGGACAATCATCCTTAGCTGATGAGATTTCCGAGCTCGTTGAAATGCCGGCACGTGATATAGGCACATGCTATGATCCACATTGCATTTCACTTCCTCGCTTTCAGAGTAAAGTTGACATATTGGTAGCTACCCCTGGTAGGCTTATGGATCACATTAATACTACCATAGGCTTCACGCTTGAGCATCTTTATTATCTTGTGGTTGATGAAACAGATCGATTGCTTCGTGAGGCATACCAATCATGGTTGCCTACTGTGCTTGAACTGATCCAATCTAATGATGATGGTTTTTCCCTACCGTCTGCTTCTTTTTTCCCCTGTTCTGCTAGTGCATTAAGAACCAGAAGAAGATGTGGAGTTGAGAGGGGGTTCAAGGACAAGCCTTATCCCAGGCTGGCAAAGATGGTTCTATCTGCGACATTAACTCAGGATCCAGGCAGACTTATTCAGCTTAATTTGCACCACCCTTTATTATTGAAAGCTGGACAAATGCGTTATCGGCTCCCAGAAAATTTGGAATCTTATAAACTGATTTGTGAAAAAAAGGTCAAGCCTTTATATTTAATTGCCCTTTTGAAATCCCTGGGAGAAGAAAAGTGCCTGGTTTTTACAAAATCTGTGGATTCAACACATCGTCTCTGCCAATTGCTAAATTGTTTTGAAGATCTGCGAATTGATATCAAGGAGTATTCTAGTTTACAACATCAACGTGTAAGAAGCAAGACATTGAACGAATTCCGTAAAGGGGTGTTTCAAGTGCTTCTATCTTCTGATGCATTGACTCGTGGGATGGATGTTGAAGGGGTAAGAAATGTCATTAATTATGACGTGCCCAAATTCATAAAAACTTATGTTCATCGGGCGGGCAGGACTGCAAGAGCTGGCCAGACTGGGCGTTGCTTCACATTGATGTCAGAAGATGAGGTTCGACGATTTAAGAAGTTAATTGGAAAGGCTGAGGGTGGTTCTTTTCTGGACCATATTGTTTCGTCCAGTCAAATTGAAGCACTCAATACTACCTACCAATCAGCACTGACAAAATACAAGGAGATAATTTCGAAGACACGAAAGAAACCCAAGAATTAG 1494 0.4431 MGEEKQQSIPALPWMRDPVDVTLTQQLPLHSVPSLHPKLKSALEDMGISNLFPVQVAVWHETVGPGNFERDICVNSPTGSGKTLAYALPLVQMLSGRVTKCLHALVVVPTRDLALQVKQVFDAVASPLGLRVGLAVGQSSLADEISELVEMPARDIGTCYDPHCISLPRFQSKVDILVATPGRLMDHINTTIGFTLEHLYYLVVDETDRLLREAYQSWLPTVLELIQSNDDGFSLPSASFFPCSASALRTRRRCGVERGFKDKPYPRLAKMVLSATLTQDPGRLIQLNLHHPLLLKAGQMRYRLPENLESYKLICEKKVKPLYLIALLKSLGEEKCLVFTKSVDSTHRLCQLLNCFEDLRIDIKEYSSLQHQRVRSKTLNEFRKGVFQVLLSSDALTRGMDVEGVRNVINYDVPKFIKTYVHRAGRTARAGQTGRCFTLMSEDEVRRFKKLIGKAEGGSFLDHIVSSSQIEALNTTYQSALTKYKEIISKTRKKPKN* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0277 497 SMART helicmild6 350 431 IPR001650 -
Mtr4g0277 497 SMART ultradead3 47 311 IPR014001 -
Mtr4g0277 497 PANTHER ATP-DEPENDENT RNA HELICASE DDX51 27 474 - -
Mtr4g0277 497 CDD SF2_C_DEAD 308 439 - -
Mtr4g0277 497 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 295 IPR014001 -
Mtr4g0277 497 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 323 472 IPR001650 -
Mtr4g0277 497 PANTHER RNA HELICASE 27 474 - -
Mtr4g0277 497 CDD DEADc_DDX51 39 295 - -
Mtr4g0277 497 Pfam Helicase conserved C-terminal domain 320 431 IPR001650 -
Mtr4g0277 497 Gene3D - 306 497 IPR027417 -
Mtr4g0277 497 Gene3D - 19 298 IPR027417 -
Mtr4g0277 497 Pfam DEAD/DEAH box helicase 53 281 IPR011545 GO:0003676|GO:0005524
Mtr4g0277 497 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 450 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0277 Mtr-Chr4 3373887 3381720 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0277 71 446 Eukaryotic Initiation Factors Gene Family AT3G13920 24.093 2.28e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0277 K14807 - vvi:100258315 670.618