Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0266 ATGGCAAGAGAAGGTTTTGGACTTGAAATAACCGAGCTAAGGTTGGGTTTGCCATGTGGTGAGCCACAAAAGAATGAGAAGAAGAGGATGTTCTCCGAGATTGACGGTGGCGAGGAAGAAAATGGAGGTTCCGGTGACCAGAAAATCGAGAAGAAGAATCAAGTTGTGGGATGGCCTCCGGTGTGTTCGTACCGGAAGAAGAATATGAATGAAGGTTCAAAAATGTACATGAAGGTTAGCATGGATGGAGCTCCTTACTTGCGTAAGATTGATCTTGGTTTGCATAAGGGATACTTGGAGTTAGCTTTGGCTTTGGAGAAGCTCTTTGGTTGTTGTGGAATTGAGGAAGCGTTGAAGGATGCAGACAATTGTGAACACGTTCCCATTTATGAGGACAAAGATGGTGACTGGATGCTGGTTGGAGATGTCCCTTGGGAGATGTTTATTGAATCATGCAAGAGGCTGAGGATTATGAAGAGATCAGATGCAAAGGGTTTTGGTTTGCAACCAAAAGGATCTTTAAAGAGATTCATATAG 537 0.4358 MAREGFGLEITELRLGLPCGEPQKNEKKRMFSEIDGGEEENGGSGDQKIEKKNQVVGWPPVCSYRKKNMNEGSKMYMKVSMDGAPYLRKIDLGLHKGYLELALALEKLFGCCGIEEALKDADNCEHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKGFGLQPKGSLKRFI* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0266 178 SUPERFAMILY CAD & PB1 domains 67 159 - -
Mtr4g0266 178 Gene3D - 68 171 - -
Mtr4g0266 178 ProSiteProfiles PB1 domain profile. 74 162 IPR000270 GO:0005515
Mtr4g0266 178 Pfam AUX/IAA family 47 166 IPR033389 -
Mtr4g0266 178 MobiDBLite consensus disorder prediction 21 47 - -
Mtr4g0266 178 PANTHER AUXIN-RESPONSIVE PROTEIN IAA6 4 166 - -
Mtr4g0266 178 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 166 IPR003311 GO:0005634|GO:0006355
Mtr4g0266 178 MobiDBLite consensus disorder prediction 20 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0266 Mtr-Chr4 3172309 3176598 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0266 50 164 B3 DNA Binding Superfamily AT4G23980 36.522 9.38e-11 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Mtr4g0266 AUX_IAA 2.5e-43 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0266 K14484 - gmx:547784 278.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g0266 4 3172309 3176598 Mtr4g0266 4 3172309 3176598 ECH