Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0222 ATGAACTCTGTAAAACTCGAAAGATGTTCAAAGGTCTCAGCAGGAAGGATAGTAGTGCGAGGTTTGGCATCTATGTCAGAATGGAAAGAAATGAAAAGAAAGGGAAAGAAAGGTGTACTGAATCATTCTGGGAGAATTGAGATGAAAAATGGGGACTCAACTATTGTTGATCGGCCTAAGTTTAAGCGCTGGAAAATTTCTGCTGATGGTACAAGTGTTGGGGATAAGAGTGGCAAAGATTCAGGTGAAGCTTATAGTCCCAACGAAGAAAAGTATCCTCAAGATTTTGGGTTGAACGATTTGTTGGTTACAAACACTGTTGAACAAACAAGTGACTGTACTTTGAAGGAGGATCCCATGGTCTTATCTGATATAGTGGATGGGGATAATTTGGCCAACGATGAACCTGCAAAAGTGGAATTGGTTGGCATCGAATCTATGGATACAGAATTTGCAACTGAAGACTGTACCTTGAATAAGGAAGATCGCGTGGTCCCATCTCAACAATTGGATCTGCCTATTTTGGAGACGTTCGATGTGGAATTTGCAACTGAAAGCTGTAGTTTGATGAACGAAAACGATGTGCCTATTTTGGAGACTTTCGACGTGGAATTTGCAACTGAAGACTGTAGTTTGAAGAACAAAAATGCTGTGATTTCATCTCATCAAATGGATGAGTCTAATTTGGCGAAAGATGAACCTGCAAAACTGGAATTGGCGGGGATGGAAACTTTGGATACGGAATTTGCAACAGAAGGCTCCGTAAAACAAGATTTATCCTATATATCAAAGGCATCATATCCAGTTGGCGAGGCAGCTATGTCTGACGACTCAAAATCCTCGTTGTCCAATATCAATATTGGTGGTTCCGGTCCTTGTATGAAGGAGGCTTTAACTATCAGGTATGCTACTCGTAAAAGAGTTGCAGAGTTCAGAGGTTTTCCAAGTTTATGTGGAGGCAATGCTCCCCGTCTCAGTCAGGATGAGTGTCTAAAGGAGCTTTCTTCTTTGAAAGAAGTTGCAGACACTGACGTAAAAGAAGCAGAAAATAACAAGAGAAAGTTTGATAACATTGTTCAAGCTGATTCTGCAGGGAACCCTAAACTTCCTGAAAAACATAATCATCATCATCATCAGGTTAACATAAATTCTAAGGCAGTGGTTAAAGTGGAAAACATGAACACTGTAAAACTCAAAAGTAATTCAAAGGTCTCATCAGGAAGGATAGTAGTGCGAGGTTTGGCATCTATGTCAGAATGGAAAGAAATAAAAAGAAAGGGAAAGAAAGTTGATTTTAATGCCCAGCTGGACAGGTCTAAACCTGCTACCAAGTCTAGAGGTGTACTGAATCATTCTGGGAACCAGCCGTTGAAAAAGAAAAGAGAAAATTCTAGTTCTGCTGCCACGGGTCAATTAGTAACGTTAGAGAAGAATTCTCTAGACTCTAATGAAAATAACAAACACTTTAAAAGTGTCACAAAATCACCTGGTTCGAGTGTAAATGTTTTTCCTCTTGGTCGTAGTAATTTGAGCGGTCATGAGAATGACTCAGTGGCCAGGAATAAAGTGAGGAAAGCATTGCGACTGTTCCAAGCTTTTTATAGAAAGATTTTGCAGGAAGCCAAAGCAAAACCAAAGTCAAATGAGAAAGAAATAAAGAGGTTTGATTTACAAGCTGCGAAAAAGCTTAAAGAGGAAGGGAACTACGTTAATGAAGGGGAGAATATCTTAGGATCTGTTCCTGGGGTTGAAGTTGGCGATGAATTTCAATACAGAGTAGAGCTTAATATAATTGGCCTTCATCGCGAGATTCAGGGTGGTATAGATTATGTGAAGCAAAAAGATAAGATTCTTGCAACTAGTATTGTTGATTCGGGGGGCTATGCTGACGACTTAAATAATTCAGATGTTTTGATATATACAGGGCAGCGTGGAAATGTGACGAGCAGTGATAAAGAGCCAGAAGATCAGAAGCTTGAACGGGGCAATCTTGCTCTGAAGAACAGTAGTGTGGTAAAGAATTCTGTTAGGGTGATACGGGGCTCTGAATCGATGGATGGAAAAAGCAAGAAATATGTTTATGATGGACTTTATGTAGTTGAGTCATGTTGGCAGGATATAGGACCACATGGGAAGCTGATTTATAAGTTTTGCTTGCGAAGAATCCCGGGACAACCAGAGCTTTCCTTCAAGGAAGTGAAGAAATCTAAAAAATTCAAAACAAGAGAAGGTCTATGTGTCGAAGATATTTCCTACGGGAAAGAGAAAATTCCAATATGTGCTGTGAACACCATAGATAACGAGAAACCCCCTACATTTAAATACGTAACCGAGATGATATATCCTGAATGTTGCAATCTTATCCCTCCAAAAGGATGTAATTGTACTAATGGATGCTCTGACCATAAGAAATGTTCTTGTGTAGTGAAAAATGGTGGGGAGATTCCATTTAATCATAATGGGGATATTGTAAAAGTAAAGCCTCTAGTCTATGAGTGTGGTCCTAAATGCAAGTGCCCTTCAACCTGCCATAACAGAGTTAGCCAACTTGGCATAAATATTCAACTCGAAATTTTTAAAACCAATTCAATGGGATGGGGTGTGAGATCCTTAAATTCCATCCCTTCAGGAAGTTTTATCTGTGAATATATTGGAGAGGTTCTTGAAGAAAAGGAAGCTGAACAAAGAACCAGTAATGATGAGTATCTTTTCGATATCGGAAATAACAAAAACAATAATAATCTTTGGGATGGACTTTCAAACCTTTTTCCAAATTCACACTCAAGTTCAAGTGATGTAGTGAAGGATTTTGACTTTACGATCGATGGCGCTCAGTTTGGTAATGTGGGGAGATTTGTTAACCATAGTTGCTCCCCTAATCTATATGCTCAGAATGTCCTTTATGATCATCAAGACACCAGGGTTCCTCACATCATGTTATTTGCTGCCGAGAACATTCCTCCGTTGCAAGAGCTGACATATGATTACAATTACACGATAGATACAGTTCTTGATTCCGATGGCAATATGAAAAAGAAGTACTGCTTTTGTGGTTCTGTGGAATGTACTGGTAGGTTGTATTGA 3084 0.3933 MNSVKLERCSKVSAGRIVVRGLASMSEWKEMKRKGKKGVLNHSGRIEMKNGDSTIVDRPKFKRWKISADGTSVGDKSGKDSGEAYSPNEEKYPQDFGLNDLLVTNTVEQTSDCTLKEDPMVLSDIVDGDNLANDEPAKVELVGIESMDTEFATEDCTLNKEDRVVPSQQLDLPILETFDVEFATESCSLMNENDVPILETFDVEFATEDCSLKNKNAVISSHQMDESNLAKDEPAKLELAGMETLDTEFATEGSVKQDLSYISKASYPVGEAAMSDDSKSSLSNINIGGSGPCMKEALTIRYATRKRVAEFRGFPSLCGGNAPRLSQDECLKELSSLKEVADTDVKEAENNKRKFDNIVQADSAGNPKLPEKHNHHHHQVNINSKAVVKVENMNTVKLKSNSKVSSGRIVVRGLASMSEWKEIKRKGKKVDFNAQLDRSKPATKSRGVLNHSGNQPLKKKRENSSSAATGQLVTLEKNSLDSNENNKHFKSVTKSPGSSVNVFPLGRSNLSGHENDSVARNKVRKALRLFQAFYRKILQEAKAKPKSNEKEIKRFDLQAAKKLKEEGNYVNEGENILGSVPGVEVGDEFQYRVELNIIGLHREIQGGIDYVKQKDKILATSIVDSGGYADDLNNSDVLIYTGQRGNVTSSDKEPEDQKLERGNLALKNSSVVKNSVRVIRGSESMDGKSKKYVYDGLYVVESCWQDIGPHGKLIYKFCLRRIPGQPELSFKEVKKSKKFKTREGLCVEDISYGKEKIPICAVNTIDNEKPPTFKYVTEMIYPECCNLIPPKGCNCTNGCSDHKKCSCVVKNGGEIPFNHNGDIVKVKPLVYECGPKCKCPSTCHNRVSQLGINIQLEIFKTNSMGWGVRSLNSIPSGSFICEYIGEVLEEKEAEQRTSNDEYLFDIGNNKNNNNLWDGLSNLFPNSHSSSSDVVKDFDFTIDGAQFGNVGRFVNHSCSPNLYAQNVLYDHQDTRVPHIMLFAAENIPPLQELTYDYNYTIDTVLDSDGNMKKKYCFCGSVECTGRLY* 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0222 1027 ProSiteProfiles Pre-SET domain profile. 791 851 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mtr4g0222 1027 SUPERFAMILY SET domain 737 1003 IPR046341 -
Mtr4g0222 1027 MobiDBLite consensus disorder prediction 431 470 - -
Mtr4g0222 1027 Coils Coil 331 351 - -
Mtr4g0222 1027 ProSiteProfiles YDG domain profile. 578 721 IPR003105 -
Mtr4g0222 1027 SMART set_7 854 1003 IPR001214 GO:0005515
Mtr4g0222 1027 MobiDBLite consensus disorder prediction 68 92 - -
Mtr4g0222 1027 Pfam SAD/SRA domain 577 725 IPR003105 -
Mtr4g0222 1027 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 502 1026 - -
Mtr4g0222 1027 SMART G9a_1 573 725 IPR003105 -
Mtr4g0222 1027 Gene3D SET domain 742 1027 IPR046341 -
Mtr4g0222 1027 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 440 1027 IPR025794 GO:0016571
Mtr4g0222 1027 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6-LIKE ISOFORM X1 502 1026 - -
Mtr4g0222 1027 Pfam Pre-SET motif 750 846 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mtr4g0222 1027 ProSiteProfiles Post-SET domain profile. 1011 1027 IPR003616 -
Mtr4g0222 1027 Gene3D - 560 741 IPR036987 -
Mtr4g0222 1027 SMART preset_2 747 838 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mtr4g0222 1027 Pfam SET domain 865 997 IPR001214 GO:0005515
Mtr4g0222 1027 SUPERFAMILY PUA domain-like 568 734 IPR015947 -
Mtr4g0222 1027 ProSiteProfiles SET domain profile. 854 997 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0222 Mtr-Chr4 2648127 2653515 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0222 509 1026 Su(var)3-9 homologs AT5G04940 40.525 7.45e-115 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mtr4g0222 SAD_SRA 9.1e-47 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0222 K11420 - gmx:100803378 1012.68