Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0221 ATGTTCTTATCTGATCAAGTGGATGGGGATAGTTTGGCTAACGATGAACCTGCAAAAGTGGAATTGGTTGGCATGGAAACTATGGATACAGAATTGGCACCTGAAGACTGTAGATTGAAAAAGGATGTTACCGTGGTCTCATCTCATCAATTTGATGTGATTATTTTGGAGACTTTAGATGTGGAATTTGCAACTGAAAACTGTAGTTTGAAGAACGAAAATGCAGTGATATCATCTCATCAAATGGATGAGTCTACTTTGGCAAACGATGAACCTGAAAAACTGGGATTCGCGGGTATGGAAACTTTGGATATGGAATTTGCAACAGAAGGCGCCGTAAAACAAGATTTATCCTATATATCAAAGGCATCGTATCCAGATGGCGAGGCAGCTACGCCTGATGACTCAAAATCCTCTTTGTCCACTATCAATATTGGTGGTGCTGGTGCTTGTATGAAGGAGGCTTTAACTAAAAGGTACGCTCCTCGTAAAAAAGTTGCAGTGTTCAGAGATTTTCCACGTTTGTGTGGAGGCAATGCTCCCTGTCTCAGTCAGGATGAGTGTCTGAAGGAGCTTTCTTCTTTGAAAGAAGTTGAAGCCACTGACGTAAACGAAGCAGAAAATAACAAGAGAAAGTTTGATAACATTGTTCAAGCTGATTCTGAAGGGAACACTAGCCTTCCTGAAAAATATAATCATCTTCTGGTTAACATAAATTCTAAGGTAGTGGTTAAAGCAGAAAACATCAACACTGTAAAACTCGAAAGTAGTTCCATGGTCTCATCAGGCAGGAAATTAGTGCACGGTTTGATGGCTACATCAGAATGGAAAGCAAGGGAAAGTAAGGGAAAGAAAGTTGATTTTTGTGCCCAGCTGGACAAGTCAAAAACTGCTACCAAGTCGAAAGGTGTACTGAATCATTCTGGGCACCAGCCGTTGAAAAAGAAAAGAGAAAATTCTAGTTCTGATGACATGGGTCAATTAGTAACAGTGGAGAAGAGTTCCCTAGACCCTAATGAAAATAACAAACACTTTAAAAGTGTCCCAAAATCACGTGGTTCGAGCGTAAATGTTTTTCCTCTTGGTCATAGTAATTTTAGTGGTCATGAGAATGACTCAGTGGCCAGGAATAAAGTGAGGAAAGCATTGCGCCTGTTCCAAGCTTTTTATAGAAAGATTTTGCAGGAAGCCGAAGCAAAACCAAAGTCAAATGTGAAAGAAGTGAAGAGGTTTGATTTACAAGCTGCGAAAAAGCTTAAGGAGGAAGGGAGCCATGTTAACGAAGGGGAGAATATCTTGGGATCTGTTCCTGGGGTTGAAGTTGGTGATGAATTTCAATTCAGAATAGAGCTTAATATAATTGGCCTTCATCGCCAGATTCAGGGTGGTATAGATTATGTGAGGCAGAAAGACAAGATCCTTGCAACTAGTATTGTTGCTTCGGGTGGCTATGCTGATGACTTAGATAATTCAGATCTTTTGATATATACAGGACAGGGAGGAAACGTGACGAGCAGTGATAAAGAGCCAGAAGATCAGAAGCTTGAACGGGGAAATCTTGCTTTGAAGAACAGTAATGAGGAAAAGAATTCTGTTAGAGTGATACGGGGCTATGAATCAATGGACGGTAAAAGAAAGATATATGTTTACGATGGACTTTATGTAGTTGAGTCATGTTGGCAGGATATAGGGCCACGTGGGAAGATGGTTTATAAGTTTAGCTTGCGAAGAATCCCGGGTCAACCAGAGCTTGCCTTGAAGGAAGTGAAGAAATCTAAAAAGTCCAAAACAAGAGAAGGTCTATGTGTCGAAGATATTTCCTACGGGAAAGAGAAAATTCCTATATGTGCTGTGAACACCATAGATAACGAGAAACCCCCTACATTTAAATACATAACCGAGATGATATATCCTGAATGTTGCAATCTTGTCCCTCCAAAAGGATGTAATTGTACTAATGGATGCTCTGACCATAAGAAATGTTCTTGTGTAGTAAAAAATGGTGGCGAGATTCCATTTAATCATAATGGGGATATTGTAGAAGTAAAGCCTCTAGTCTATGAGTGTGGTCCTAAATGCAAGTGCCCTTCAACCTGCCATAATAGAGTTAGCCAACTTGGCATAAATATTCAACTTGAAATTTTTAAAACCAATTCAATGGGATGGGGTGTAAGATCCTTAAATTCCATCCCTTCAGGAAGTTTTATCTGTGAATATATTGGAGAGGTTCTTGAAGAAAAGGAAGCTGAACAAAGAACCGGCAATGATGAGTATCTTTTCGATATCGGAAATAACAAAAACAACAATAATCTTTGGGATGGACTTTCAAACCTTTTTCCAGATTCAAGTTCAAGTGAAGTAGTGGAGGATTCTGACTTCACTACCGATGCCGCTCAGTTTGGTAATGTGGGGAGATTTGTTAACCATAGTTGCTCCCCTAATCTTTATGCTCAGAATGTCCTTTATGATCATCAAGACAGCAGGGTTCCTCACATCATGTTATTTGCTGCTGAGAACATTCCTCCCTTGCAAGAGCTGACATACGATTACAATTACACGATAGATACAGTTCGTGATTCCGATGGCAATATCAAAAAGAAGTACTGCTTTTGTGGTTCTGTTGAATGTACTGGTAGGTTGTATTGA 2646 0.398 MFLSDQVDGDSLANDEPAKVELVGMETMDTELAPEDCRLKKDVTVVSSHQFDVIILETLDVEFATENCSLKNENAVISSHQMDESTLANDEPEKLGFAGMETLDMEFATEGAVKQDLSYISKASYPDGEAATPDDSKSSLSTINIGGAGACMKEALTKRYAPRKKVAVFRDFPRLCGGNAPCLSQDECLKELSSLKEVEATDVNEAENNKRKFDNIVQADSEGNTSLPEKYNHLLVNINSKVVVKAENINTVKLESSSMVSSGRKLVHGLMATSEWKARESKGKKVDFCAQLDKSKTATKSKGVLNHSGHQPLKKKRENSSSDDMGQLVTVEKSSLDPNENNKHFKSVPKSRGSSVNVFPLGHSNFSGHENDSVARNKVRKALRLFQAFYRKILQEAEAKPKSNVKEVKRFDLQAAKKLKEEGSHVNEGENILGSVPGVEVGDEFQFRIELNIIGLHRQIQGGIDYVRQKDKILATSIVASGGYADDLDNSDLLIYTGQGGNVTSSDKEPEDQKLERGNLALKNSNEEKNSVRVIRGYESMDGKRKIYVYDGLYVVESCWQDIGPRGKMVYKFSLRRIPGQPELALKEVKKSKKSKTREGLCVEDISYGKEKIPICAVNTIDNEKPPTFKYITEMIYPECCNLVPPKGCNCTNGCSDHKKCSCVVKNGGEIPFNHNGDIVEVKPLVYECGPKCKCPSTCHNRVSQLGINIQLEIFKTNSMGWGVRSLNSIPSGSFICEYIGEVLEEKEAEQRTGNDEYLFDIGNNKNNNNLWDGLSNLFPDSSSSEVVEDSDFTTDAAQFGNVGRFVNHSCSPNLYAQNVLYDHQDSRVPHIMLFAAENIPPLQELTYDYNYTIDTVRDSDGNIKKKYCFCGSVECTGRLY* 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0221 881 SMART set_7 710 857 IPR001214 GO:0005515
Mtr4g0221 881 MobiDBLite consensus disorder prediction 299 326 - -
Mtr4g0221 881 ProSiteProfiles YDG domain profile. 434 577 IPR003105 -
Mtr4g0221 881 SMART preset_2 603 694 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mtr4g0221 881 Pfam Pre-SET motif 606 702 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mtr4g0221 881 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6-LIKE ISOFORM X1 341 880 - -
Mtr4g0221 881 ProSiteProfiles Pre-SET domain profile. 647 707 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mtr4g0221 881 SUPERFAMILY SET domain 593 857 IPR046341 -
Mtr4g0221 881 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 341 880 - -
Mtr4g0221 881 Pfam SET domain 721 851 IPR001214 GO:0005515
Mtr4g0221 881 SMART G9a_1 429 581 IPR003105 -
Mtr4g0221 881 ProSiteProfiles Post-SET domain profile. 865 881 IPR003616 -
Mtr4g0221 881 Pfam SAD/SRA domain 433 581 IPR003105 -
Mtr4g0221 881 ProSiteProfiles SET domain profile. 710 851 IPR001214 GO:0005515
Mtr4g0221 881 SUPERFAMILY PUA domain-like 429 590 IPR015947 -
Mtr4g0221 881 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 296 881 IPR025794 GO:0016571
Mtr4g0221 881 Coils Coil 189 209 - -
Mtr4g0221 881 Gene3D - 416 598 IPR036987 -
Mtr4g0221 881 Gene3D SET domain 599 881 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0221 Mtr-Chr4 2633938 2636938 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0221 376 880 Su(var)3-9 homologs AT5G04940 41.075 3.21e-121 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mtr4g0221 SAD_SRA 6.6e-49 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0221 K11420 - gmx:100803378 1014.99