Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0172 ATGGAGGAGTCAGGAGAAAATTGGCCTTCTAATTCTGATTTGGAAATAAGTGATGAAGCCATTCTTAAAGATGGAGAATCTGAATCTGTATGTGATGATGATTATTGTGAAGATCAGATTGGAGATCCCACAGACAATACAAAGGAAAACAATGAGAAGGAGATCACAGAGATGTTGAAGGAACTTTCAGACGTTATGGGCTTAAAGAAGATGGACGAACTTTCGATCATAGAACAAGCTAGAGACTATTTAGCAACACTTCAAGAACGTGTGAGAGAGCTAGAAGAAGAAGCTGGATCCAACATTTGTACTAACAAAAGGACCAAACTGAGTTCAAATATTACTCTTCCAGAGGTCAAAGCAAAAGTGTTACAAAAAGATGTACTTGTCATAGTCCATTGTGAGAAACAAAATGGTATTCTGCTCAAAATACTGACCTACCTTGAAAATCTTCATCTTTCAGTAGTTAACAGTAGAGTCTTGAATTTTGGAAAATCCATCCTTGACATCACCATCGTTGCCAAGATGGATGATGGCTACAACCTTAAAGTGGATGAACTAGTGAAAACCATGAGAATAGCAATCTCGACACAATAG 597 0.3752 MEESGENWPSNSDLEISDEAILKDGESESVCDDDYCEDQIGDPTDNTKENNEKEITEMLKELSDVMGLKKMDELSIIEQARDYLATLQERVRELEEEAGSNICTNKRTKLSSNITLPEVKAKVLQKDVLVIVHCEKQNGILLKILTYLENLHLSVVNSRVLNFGKSILDITIVAKMDDGYNLKVDELVKTMRIAISTQ* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0172 198 PANTHER PROTEIN, PUTATIVE-RELATED 38 197 - -
Mtr4g0172 198 Coils Coil 77 97 - -
Mtr4g0172 198 PANTHER BHLH TRANSCRIPTION FACTOR 38 197 - -
Mtr4g0172 198 MobiDBLite consensus disorder prediction 1 52 - -
Mtr4g0172 198 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 54 103 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0172 Mtr-Chr4 2053674 2056665 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0172 53 196 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 35.393 1.33e-24 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0172 - - aip:107616596 178.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g0172 4 2053674 2056665 Mtr2g3731 2 51382593 51385723 PCT