Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0168 ATGGAAGAGTCCTGGGAAAATTTTCATCTTGACACGGAATTGGATTGTGGTGATGATTATTTCATAGGGGACGATTTTCTTCAAGATATTTTGTTACAAACACCACCACAAAGTTTAATGTATTCAGAAAGTGAAAACAATTCTGTTACTGTTAACGTTAACGGTGGTGTTGAGTTTGTTGGGAACATGATCAAAAGTAACAGTTCAAACTCAATCGTGTCTCAACAACATCAACCACAAGAACAAGAACAAGAACATGGTTTGAAATCGAAAAAGGTTCCTCGGAGAAGTTCTTCTCCAAAGACATATATTTTGTCTTTTGATAATTCAACTATGATACCAGCTACACCTAATTATAAGAATAAACGTAGCCATGAAAGTAATCAAAAGAGTGAAATGAAAATAAATCAACAAAATGGAGTGAAGAGAGGTAGAAGCAGTTCACAGTGTATTGATCATATAATGGCAGAGAGAAAACGAAGACAGGAGTTGTCTGAGAAATTCATTGCACTTTCAGCCACTATTCCCGGCTTGAGCAAGACAGACAAGGCTTCAATACTTCGAGAAGCAATTGATTATGTGAAACAACTTAAAGAACGTGTTGATGAGCTCGAGAAACAAGACAAAAATGTTGGTGTCACGCCGGTGATGGTTCTCCGGAAACCTTATTCATGTGGAAACAATAATTACAATGAAGACACGAATTCGAGTGAAACAAGTTGTGATGGTGATTGTAAGAACAATATCCTTCCAGAGATTGAAGCAAAAGTCATTGGAAAGGAAGTGCTTATTGAAATCCATTGTGAGAAACAAAATGGAATTGAACTCAAATTATTTAACCATATTGAAAATCTTCAACTCTTTGTCACTGGTAGCAGTGTCTTGCCTTTTGGGAAATCTGCTATTTCCATCACTATTATTGCTCAGATGGGTGGTGGGTACAAAGTGACAGTGAATGATCTAGTGAAAAGCATTAGGAAAGTGCTATTGAAATAA 996 0.3635 MEESWENFHLDTELDCGDDYFIGDDFLQDILLQTPPQSLMYSESENNSVTVNVNGGVEFVGNMIKSNSSNSIVSQQHQPQEQEQEHGLKSKKVPRRSSSPKTYILSFDNSTMIPATPNYKNKRSHESNQKSEMKINQQNGVKRGRSSSQCIDHIMAERKRRQELSEKFIALSATIPGLSKTDKASILREAIDYVKQLKERVDELEKQDKNVGVTPVMVLRKPYSCGNNNYNEDTNSSETSCDGDCKNNILPEIEAKVIGKEVLIEIHCEKQNGIELKLFNHIENLQLFVTGSSVLPFGKSAISITIIAQMGGGYKVTVNDLVKSIRKVLLK* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0168 331 Coils Coil 187 214 - -
Mtr4g0168 331 Gene3D - 148 213 IPR036638 GO:0046983
Mtr4g0168 331 MobiDBLite consensus disorder prediction 97 122 - -
Mtr4g0168 331 Pfam Helix-loop-helix DNA-binding domain 151 198 IPR011598 GO:0046983
Mtr4g0168 331 SMART finulus 154 203 IPR011598 GO:0046983
Mtr4g0168 331 PANTHER BHLH TRANSCRIPTION FACTOR 1 331 - -
Mtr4g0168 331 MobiDBLite consensus disorder prediction 69 147 - -
Mtr4g0168 331 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 331 - -
Mtr4g0168 331 MobiDBLite consensus disorder prediction 131 146 - -
Mtr4g0168 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 145 208 IPR036638 GO:0046983
Mtr4g0168 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 148 197 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0168 Mtr-Chr4 1978271 1979961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0168 138 329 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.837 1.46e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr4g0168 HLH 2.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0168 - - mtr:MTR_4g009540 630.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3732 2 51390210 51395523 Mtr4g0168 4 1978271 1979961 PCT