Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0166 ATGGAGGAGTCATGGGAAAATTTTCATCTTGACATGGAATTGGATTGTGGTGATGATTATTTCATAGATGATTGTAACAACCTTAACATTGATGGTGATGATTTTATTAGAGAGATTTTATTACAAACACCAGAAGGTTTAATCTCTTCAGAAAGTGATCATTCATTTTTTCATGTTCAAACTGATACTGTTACCGTTAATGTTAACGGTGGTGTTGAGGTTGTTGGGAACACGGTTAAGAGTAAGAGTTCAAACTCAATTGTGTCTCAACAACATCAACCACAAGAACAAGAACAACAACATGGTTTGAAATCGAAAAAGGTTCCTCGTAAAAGTTCTTCTCCAAAGACATATATTTTGTCTTTTGATAATTCAACTATGATACCAGCTACACCAGAACCTTGTGTTAATTTGAGTTCTAGGAATAAACGTAGCCGTGAAAGTACTCAAAAAGCTGAAGTGAAAACTAATCAACAAATCAATGGAGTGAAGAAAGGTAGAAGCAGTTCACAATGTATTGATCATATAATGGCAGAGAGAAAAAGGAGACAAGAATTGTCTGAAAAATTCATTGCACTTTCGGCTACTATTCCTGGATTGAGCAAGATGGACAAGGCTTCATTACTTCGAGAAGCGATTGATTATGTGAAACAACTTAAAGAACATGTTGAAGAGCTCGAGAAACAAGACAAAAATGTTGGTGTCACGCCGGTGATGGTTCTCCGACAACCTTATTCATGTGGAATCAATGAATACACAAATTCTGGTGAAACAAGTTGTGGTGATGATTGTAACCATCATATCCTTCCAGATATTGAAGCAAGAGTCATTGGAAAGGAAGTGCTTATTGAAATCCATTGTGAGAAACAAAATGGAATTGAGCTCAAATTACTTAACCACATTGAAAATCTTCAACTCTTTGTCACTGGTAGCAGTGTCTTGCCTTTTGGGAAATCTGCTATTTCCATCACTATTATTGCTCGGATGGGTGATGAATGCATAGTGACAATGAATGATCTAGTGAAAAGCATTAGACAAGTGCTCTTGAAACCTTGA 1056 0.3617 MEESWENFHLDMELDCGDDYFIDDCNNLNIDGDDFIREILLQTPEGLISSESDHSFFHVQTDTVTVNVNGGVEVVGNTVKSKSSNSIVSQQHQPQEQEQQHGLKSKKVPRKSSSPKTYILSFDNSTMIPATPEPCVNLSSRNKRSRESTQKAEVKTNQQINGVKKGRSSSQCIDHIMAERKRRQELSEKFIALSATIPGLSKMDKASLLREAIDYVKQLKEHVEELEKQDKNVGVTPVMVLRQPYSCGINEYTNSGETSCGDDCNHHILPDIEARVIGKEVLIEIHCEKQNGIELKLLNHIENLQLFVTGSSVLPFGKSAISITIIARMGDECIVTMNDLVKSIRQVLLKP* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0166 351 MobiDBLite consensus disorder prediction 130 168 - -
Mtr4g0166 351 Gene3D - 170 235 IPR036638 GO:0046983
Mtr4g0166 351 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 174 245 IPR036638 GO:0046983
Mtr4g0166 351 Pfam Helix-loop-helix DNA-binding domain 173 220 IPR011598 GO:0046983
Mtr4g0166 351 MobiDBLite consensus disorder prediction 152 168 - -
Mtr4g0166 351 PANTHER BHLH TRANSCRIPTION FACTOR 1 350 - -
Mtr4g0166 351 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 170 219 IPR011598 GO:0046983
Mtr4g0166 351 Coils Coil 209 229 - -
Mtr4g0166 351 MobiDBLite consensus disorder prediction 80 98 - -
Mtr4g0166 351 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 350 - -
Mtr4g0166 351 MobiDBLite consensus disorder prediction 80 116 - -
Mtr4g0166 351 SMART finulus 176 225 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0166 Mtr-Chr4 1957790 1962702 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0166 166 348 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.262 3.06e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr4g0166 HLH 3.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0166 - - mtr:MTR_4g009540 491.115