Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0165 ATGAACATTGAAAGCTTCTCACACGACCCCACAACAACCATAACCACCACCTTAAACCTTCCAAAACACAACCCTTCTCTCGAAGGAATCGCTGCTATTGTCGGAGAACAAATCCTCTTTGGACCCCACCATAACAAAACAACACCTTCAACATGTGTTTCAAACCCTAAAACCCTAACCCTAACAGAACCAACCAAAACCAACAACACTAACCCTTTACAGAAAAACTATAGAGGAGTTAGAAAACGACCATGGGGAAGATGGTCAGCTGAAATACGAGACAGAATCGGAAGATGTCGTCACTGGCTAGGAACGTTTGATACGGCGGAAGAGGCGGCGCGTGCTTACGACGCGGCAGCTAGGAGATTGAGAGGTTCTAAGGCAAGAACAAATTTTAAGATACCTTCGGTTTTGCCGGTACCTTTATCACCAACTTCATCTTCTTCTTCGTCTGATATGAAAGGTAAGAACAAGAAGAGTGTACGTAATAGTGTTAGGAAGTGTTGTGTTGTTAGTTCTGTGGGAGAGTTGTTCAGTGGTGTGCCTGAAGTTAGAAGAGAAAGAGATAATAATGATAATGGAAATGGTGTCTTTGGTGGTAGAAGCACTCGAATGGTGATGTAG 624 0.4343 MNIESFSHDPTTTITTTLNLPKHNPSLEGIAAIVGEQILFGPHHNKTTPSTCVSNPKTLTLTEPTKTNNTNPLQKNYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFKIPSVLPVPLSPTSSSSSSDMKGKNKKSVRNSVRKCCVVSSVGELFSGVPEVRRERDNNDNGNGVFGGRSTRMVM* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0165 207 SMART rav1_2 76 139 IPR001471 GO:0003700|GO:0006355
Mtr4g0165 207 MobiDBLite consensus disorder prediction 48 76 - -
Mtr4g0165 207 MobiDBLite consensus disorder prediction 136 162 - -
Mtr4g0165 207 MobiDBLite consensus disorder prediction 48 77 - -
Mtr4g0165 207 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Mtr4g0165 207 PRINTS Ethylene responsive element binding protein signature 99 115 IPR001471 GO:0003700|GO:0006355
Mtr4g0165 207 MobiDBLite consensus disorder prediction 140 154 - -
Mtr4g0165 207 CDD AP2 75 134 IPR001471 GO:0003700|GO:0006355
Mtr4g0165 207 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 22 190 - -
Mtr4g0165 207 MobiDBLite consensus disorder prediction 185 207 - -
Mtr4g0165 207 ProSiteProfiles AP2/ERF domain profile. 76 133 IPR001471 GO:0003700|GO:0006355
Mtr4g0165 207 SUPERFAMILY DNA-binding domain 76 133 IPR016177 GO:0003677
Mtr4g0165 207 Pfam AP2 domain 76 125 IPR001471 GO:0003700|GO:0006355
Mtr4g0165 207 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF084 22 190 - -
Mtr4g0165 207 Gene3D AP2/ERF domain 75 134 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0165 Mtr-Chr4 1940397 1941198 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0165 28 139 AP2-EREBP Transcription Factor Family AT1G80580 61.607 8.01e-27 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr4g0165 AP2 1.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0165 - - cam:101490906 221.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g0165 4 1940397 1941198 Mtr4g0165 4 1940397 1941198 ECH