Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0157 ATGGCAAGACCACAACAACGTTATAGAGGTGTACGCCAAAGACATTGGGGTTCTTGGGTCTCTGAAATTCGTCACCCTTTATTGAAGACAAGAATATGGTTAGGAACATTTGAAACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGATTAATGTGTGGACCAAAAGCACGTACCAATTTCCCATACAACCCAAATGGACCACAATCTTCTTCATCTAAGCTTCTTTCAGCAACTTTAACTGCAAAGTTAAATAAGTGTCACATGGCTTCTCTTTCTCTTCAAATGACCAAACAACAACAACCACCACAAAAAGAGCCACAACAAGTTTCATCACAAAGTTTCAATTCTTCCATTAATAGTAACACTTTTGTCTATGGGAATGACATTGGTGGAACAAGTGGTGAAACTAGTTTAATTAGATGGCTTGATGAAGGTAATAATTGTGTTGGGTTTGAAGGTCAAGTTGAAGTTTCTCATCAACAATTTCAACCTGTTCTTGAAGATGATCACATTGAACAAATGATTCAAGAGTTGCTTGATTATGGTTCAATTGAGCTTTGTTCTGTTGGTTCATCTTAG 588 0.3759 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNGPQSSSSKLLSATLTAKLNKCHMASLSLQMTKQQQPPQKEPQQVSSQSFNSSINSNTFVYGNDIGGTSGETSLIRWLDEGNNCVGFEGQVEVSHQQFQPVLEDDHIEQMIQELLDYGSIELCSVGSS* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0157 195 PANTHER ETHYLENE RESPONSE FACTOR 1 191 - -
Mtr4g0157 195 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 191 - -
Mtr4g0157 195 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Mtr4g0157 195 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Mtr4g0157 195 MobiDBLite consensus disorder prediction 98 117 - -
Mtr4g0157 195 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Mtr4g0157 195 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Mtr4g0157 195 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Mtr4g0157 195 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Mtr4g0157 195 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Mtr4g0157 195 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0157 Mtr-Chr4 1863164 1865013 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0157 1 192 AP2-EREBP Transcription Factor Family AT5G25190 63.542 2.28e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr4g0157 AP2 8.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0157 - - gmx:100527365 270.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g0157 4 1863164 1865013 Mtr4g0157 4 1863164 1865013 ECH