Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0146 ATGGGTCCAACTCCGTTACAGTCAGCGATGCTAATGGGTTCACCTTGTTTTCCAAACTCCATTGTTTGGTCTCAAGACAACCTCATTGCTGTTGCTTCTGGTCACAAGAGTTGTGAATGCTCTGCATTGGAAGGCGAGTGTGGTTTTCTAGCTGCGAATCTGTATGCAAAGAGTGTTTTTGGGGAAGATGCTCTTGTGAATAATCATCTTCTCAGACCAAAATCAAAGACTAATGTTGTTCTGGAACCTAGGCGCTCTTCTTGTGCCAGAAACACAGTTCCTTCGTATCGTGAAGAGTTTGGCACAGACCTTCCGCAGTTGCGGAAGAGGTCAAGGTCAAGTTCATCATCTTGGGGAAGGAGTTACACTAACACTGCGAGGCCACTGAATGAAATAAAAAAAGCTACAGATCAAGAAAGAAAGCGTGCTTTGGATGCTGCAGAGGCACTCCAAATAAATTTGCAGTCTTCAAATCCATCACTTATCAAGTCAATGGTTTGGTCTCACGTTTATAGAGGTTTTTGGTTGGGTCTTCCAAGGAGATTTTGCGAGGAACATCTTCAAAAAGTAGACTATAAAATGGTTTTAGAGGATGAAAAAGGATCAGAACATGATGCTGTTTACCTTAGGAAGAAAACTGCGCTTAGTGGTGGCTGGAGAACATTCGCATTGAAACATAAATTGGATGATGGTGATGCGGTAGTTTTTGAATTGGTTGAAGCAGCAAGATTTAAGGTACTTTATGTTGCCAATTTTCATCCAGCTCTCTTTTAA 774 0.4186 MGPTPLQSAMLMGSPCFPNSIVWSQDNLIAVASGHKSCECSALEGECGFLAANLYAKSVFGEDALVNNHLLRPKSKTNVVLEPRRSSCARNTVPSYREEFGTDLPQLRKRSRSSSSSWGRSYTNTARPLNEIKKATDQERKRALDAAEALQINLQSSNPSLIKSMVWSHVYRGFWLGLPRRFCEEHLQKVDYKMVLEDEKGSEHDAVYLRKKTALSGGWRTFALKHKLDDGDAVVFELVEAARFKVLYVANFHPALF* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0146 257 Pfam B3 DNA binding domain 162 245 IPR003340 GO:0003677
Mtr4g0146 257 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 67 249 IPR044837 -
Mtr4g0146 257 Gene3D - 135 253 IPR015300 -
Mtr4g0146 257 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS05G0481400 67 249 - -
Mtr4g0146 257 SMART B3_2 161 255 IPR003340 GO:0003677
Mtr4g0146 257 SUPERFAMILY DNA-binding pseudobarrel domain 155 248 IPR015300 -
Mtr4g0146 257 ProSiteProfiles B3 DNA-binding domain profile. 161 252 IPR003340 GO:0003677
Mtr4g0146 257 Coils Coil 133 153 - -
Mtr4g0146 257 CDD B3_DNA 159 247 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0146 Mtr-Chr4 1703471 1706154 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0146 82 246 B3 DNA Binding Superfamily AT5G58280 48.193 9.89e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr4g0146 B3 7.7e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0146 - - mtr:MTR_4g008310 404.06