Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0142 ATGGCTTCCAACGGCAACGGTAACGGCCATTTCTCCGTTACTATCGGCACCGGTCACAATGACGATGACGACGATAACAACAATCATCATCCTTCCGATAACAACAACCGCCGTAATGATAATGACAACAACGGCGACAACGATGAAGATGATGAACAAATTGATCCTGATGATCCTTTTGATATTGCTCAAACGAAGAATGCTTCTCATGAAACTCTTCGCCGTTGGAGACAAGCAGCACTGGTACTCAATGCGTCCAGGCGTTTTAGATATACTCTGGACTTCAAAGGGGAAGAGGAAAAACAGCAAAAGAAGAGCTTAATTAGAGCGCATGCACAAGTCATAAGAGCTGCACTGCTTTTTAGATTGGCCGGTGAACGTGAACTAGTGATAAGTCCAGCAGCTACACCCTCACCTCAACATTCAGTTGGTGACTTTGGAGTTGGCCTAGAACAACTTGCTTCGATGTCTAAGGATCAAAATATTTCTGCTTTACAGCAATATGGAGGGGTTAAAGGCCTATCAAGTTTACTAAAAGCAAGTCCAGATAAAGGAATTAGTGGAGATGATGCTGATCTATTGAAAAGGAAAAATGCATTTGGAACTAATACATATCCTCGGAAAAAAGGGAGAAGTTTCTGGAGGTTTTTATGGGAGGCTTGGCAAGATCTGACTCTCATAATATTGATTGTAGCAGCTGTAGTGTCATTGGTGCTTGGAATAAAAACAGAGGGTTGGAGTGACGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTTTACTTGTTATTGTAGTTACTGCTGTCAGCGACTATCGACAATCTCTGCAATTTCAGAATTTGAATGCAGAGAAACAAAATATACAATTGGAGGTCATGAGAAGTGGGAGAACGATTAAAATCTCCATATTTGATATTGTTGTTGGTGATGTTATACCCCTTAAAATAGGAGATCAGGTTCCTGCTGATGGAGTATTAATCACAGGTCACTCACTTGAAATCGACGAATCCAGTATGACTGGTGAAAGCAAGATTGTTCATAAGGATCAGAAAGCACCCTTTTTTATGTCTGGTTGCAAAGTAGCAGATGGTGTTGGCGTTATGATGGTAACTGCTGTTGGTATTAATACTGAGTGGGGATTATTGATGGCAAGTATCTCAGAGGACACAGGAGAAGAGACTCCATTACAGGTACGTTTGAATGGAGTGGCAACTTTTGTAGGTATAGTCGGGCTTTCTGTAGCTGTTTTAGTGCTTGCAGTCCTCTTGGGAAGATACTTTTCTGGCCACACATATGATGCAAAAGGAAATCCCCAATTCGTTGCCGGAAAGACTGAAATTAGTATAGTAGTTGATGGGGTCATCAAAATTTTTACCATTGCAGTCACAATTGTAGTCGTTGCAGTGCCTGAAGGTCTACCTTTGGCTGTTACTTTAACCCTGGCATACTCGATGCGGAAAATGATGGCAGATAAAGCCTTGGTGCGAAGGCTGTCAGCCTGTGAAACTATGGGCTCTGCTACAACAATTTGCAGTGATAAGACAGGAACATTGACGTTAAATCAGATGACTGTTGTTGAAGCATATGTTGGGAAGAGCAAACTAAATCCACCAGATGACTCTTCAAAGTTCCATCCAGAAGCATTATCTCTGATAAATGAAAGCATTGCACAGAATACCACCGGAAATGTTTTTGTCTCTAAGGATGGTGGAGAGCTAGAGGTTTCAGGATCACCGACAGAGAAGGCAATTCTTTCATGGGCAGTCAAGTTGGGTATGAATTTTGATGTTATCAGATCTAACTCAACAGTTCTTCATGTCTTTCCATTCAATTCCGAGAAAAAACGAGGCGGTGTTGCTCTGAAGCTGGTGGACTCTGGAGTGCATATACACTGGAAAGGAGCTGCAGAAATAGTTCTAGGAGCATGTACCCAATATCTTGATTCAAATAGTCACCTGCAATCCATCGAACAAGAGAAGGATTTTCTCAAGGAGGCTATTGATGACATGGCTGCTCGCAGTTTGCGTTGTGTTGCTATTGCATACAGATCGTATGAATTAGACAAAATTCCATCTAATGAGGAGGATTTAGCCCAATGGTCCTTACCAGAAGATGAGCTTGTTTTGCTTGCTATTGTTGGAATCAAGGATCCTTGTCGCCCTGGTGTCAAAGATGCCGTGAGAATATGCACTGACGCTGGTGTTAAGGTACGCATGGTTACTGGAGACAACCTTCAAACAGCAAAGGCAATAGCTCTGGAGTGTGGGATACTGGCTTCAAATGAAGAAGCAGTTGATCCATGTATAATTGAAGGAAAGGTATTTCGGGAGCTATCTGAAAAAGAAAGGGAACAGGTTGCGAAGAAAATTACGGTGATGGGCAGGTCTTCTCCTAATGACAAGCTTTTGCTCGTGCAAGCACTGCGTAAAGGAGGTGACGTGGTTGCTGTCACAGGAGATGGCACCAATGATGCCCCTGCACTACACGAGGCAGATATTGGTCTTTCTATGGGCATCCAAGGAACTGAAGTTGCAAAAGAAAGCTCAGATATTATAATCTTGGATGATAACTTTGCATCAGTTGTAAAGGTTGTCCGCTGGGGCCGCTCTGTATATGCAAATATTCAGAAATTTATCCAGTTCCAGCTTACTGTGAACGTTGCTGCTCTTGTAATAAATGTAGTGGCAGCAATAAGTTCTGGTGATGTTCCTTTAAATGCAGTACAGCTTTTGTGGGTCAACCTTATCATGGACACACTTGGGGCCCTTGCCCTGGCTACGGAACCACCAACAGACCACCTAATGCACAGATCACCAGTTGGTCGAAGGGAACCTCTTATTACAAATATCATGTGGAGAAACTTGATCGTACAGGCTCTTTATCAAGTTTCAGTTCTTCTCTTTCTGAACTTCTGCGGTGAAAGTATTCTACCTAAGCAAGATACTAAAGCCCATGACTATCAAGTGAAGAATACTTTGATATTCAATGCATTCGTCATGTGCCAAATATTCAATGAGTTCAATGCTCGGAAACCAGATGAAATGAATGTCTTCCCAGGAGTGACTAAGAACCGTCTCTTCATGGGAATTATTGGAATAACCTTTATACTTCAGATAGTCATCATTGAGTTCCTTGGAAAGTTTGCCTCAACGGTGAGGCTTGACTGGAAGTTGTGGCTTGTTTCTCTTATAATTGGCCTTGTCAGCTGGCCTCTTGCTATAGCTGGAAAGTTCATTCCAGTTCCCAAAACACCATTGTCACGTACGTTCATGAAGCCAATTAGACGATTGAGGAGGTCTCGTTCTTCGCAATAG 3315 0.425 MASNGNGNGHFSVTIGTGHNDDDDDNNNHHPSDNNNRRNDNDNNGDNDEDDEQIDPDDPFDIAQTKNASHETLRRWRQAALVLNASRRFRYTLDFKGEEEKQQKKSLIRAHAQVIRAALLFRLAGERELVISPAATPSPQHSVGDFGVGLEQLASMSKDQNISALQQYGGVKGLSSLLKASPDKGISGDDADLLKRKNAFGTNTYPRKKGRSFWRFLWEAWQDLTLIILIVAAVVSLVLGIKTEGWSDGWYDGGSIAFAVLLVIVVTAVSDYRQSLQFQNLNAEKQNIQLEVMRSGRTIKISIFDIVVGDVIPLKIGDQVPADGVLITGHSLEIDESSMTGESKIVHKDQKAPFFMSGCKVADGVGVMMVTAVGINTEWGLLMASISEDTGEETPLQVRLNGVATFVGIVGLSVAVLVLAVLLGRYFSGHTYDAKGNPQFVAGKTEISIVVDGVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAYVGKSKLNPPDDSSKFHPEALSLINESIAQNTTGNVFVSKDGGELEVSGSPTEKAILSWAVKLGMNFDVIRSNSTVLHVFPFNSEKKRGGVALKLVDSGVHIHWKGAAEIVLGACTQYLDSNSHLQSIEQEKDFLKEAIDDMAARSLRCVAIAYRSYELDKIPSNEEDLAQWSLPEDELVLLAIVGIKDPCRPGVKDAVRICTDAGVKVRMVTGDNLQTAKAIALECGILASNEEAVDPCIIEGKVFRELSEKEREQVAKKITVMGRSSPNDKLLLVQALRKGGDVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAISSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRREPLITNIMWRNLIVQALYQVSVLLFLNFCGESILPKQDTKAHDYQVKNTLIFNAFVMCQIFNEFNARKPDEMNVFPGVTKNRLFMGIIGITFILQIVIIEFLGKFASTVRLDWKLWLVSLIIGLVSWPLAIAGKFIPVPKTPLSRTFMKPIRRLRRSRSSQ* 1105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0142 1104 SFLD C1.7: P-type atpase like 493 870 - -
Mtr4g0142 1104 CDD P-type_ATPase_Ca_PMCA-like 193 951 - -
Mtr4g0142 1104 Pfam haloacid dehalogenase-like hydrolase 508 832 - -
Mtr4g0142 1104 SUPERFAMILY HAD-like 509 923 IPR036412 -
Mtr4g0142 1104 PRINTS Sodium/potassium-transporting ATPase signature 254 274 - -
Mtr4g0142 1104 PRINTS Sodium/potassium-transporting ATPase signature 504 525 - -
Mtr4g0142 1104 PRINTS Sodium/potassium-transporting ATPase signature 630 648 - -
Mtr4g0142 1104 PRINTS P-type cation-transporting ATPase superfamily signature 335 349 - -
Mtr4g0142 1104 PRINTS P-type cation-transporting ATPase superfamily signature 511 525 - -
Mtr4g0142 1104 PRINTS P-type cation-transporting ATPase superfamily signature 711 722 - -
Mtr4g0142 1104 PRINTS P-type cation-transporting ATPase superfamily signature 733 743 - -
Mtr4g0142 1104 PRINTS P-type cation-transporting ATPase superfamily signature 818 837 - -
Mtr4g0142 1104 PRINTS P-type cation-transporting ATPase superfamily signature 842 854 - -
Mtr4g0142 1104 MobiDBLite consensus disorder prediction 17 44 - -
Mtr4g0142 1104 Pfam E1-E2 ATPase 288 489 - -
Mtr4g0142 1104 SUPERFAMILY Calcium ATPase, transmembrane domain M 168 1081 IPR023298 -
Mtr4g0142 1104 Pfam Ca2+-ATPase N terminal autoinhibitory domain 57 98 IPR024750 GO:0005516
Mtr4g0142 1104 SUPERFAMILY Calcium ATPase, transduction domain A 289 384 IPR008250 -
Mtr4g0142 1104 Gene3D - 521 718 IPR023299 GO:0000166
Mtr4g0142 1104 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 451 539 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Mtr4g0142 1104 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 784 898 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Mtr4g0142 1104 Gene3D - 508 863 IPR023214 -
Mtr4g0142 1104 Gene3D - 219 1069 - -
Mtr4g0142 1104 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 518 715 IPR023299 GO:0000166
Mtr4g0142 1104 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 158 1081 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Mtr4g0142 1104 SMART Cation_ATPase_N_a_2 167 241 IPR004014 -
Mtr4g0142 1104 MobiDBLite consensus disorder prediction 1 15 - -
Mtr4g0142 1104 Coils Coil 653 673 - -
Mtr4g0142 1104 PANTHER CALCIUM-TRANSPORTING ATPASE 42 1095 - -
Mtr4g0142 1104 Pfam Cation transporter/ATPase, N-terminus 169 236 IPR004014 -
Mtr4g0142 1104 Pfam Cation transporting ATPase, C-terminus 903 1078 IPR006068 -
Mtr4g0142 1104 ProSitePatterns E1-E2 ATPases phosphorylation site. 513 519 IPR018303 -
Mtr4g0142 1104 PANTHER CATION TRANSPORTING ATPASE 42 1095 - -
Mtr4g0142 1104 MobiDBLite consensus disorder prediction 1 63 - -
Mtr4g0142 1104 SFLD p-type atpase 493 870 IPR044492 -
Mtr4g0142 1104 Gene3D - 68 122 - -
Mtr4g0142 1104 Gene3D - 192 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0142 Mtr-Chr4 1650363 1669674 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0142 47 1103 Primary Pumps ATPases AT3G21180 77.410 0.0 1655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0142 K01537 - gmx:100777845 1783.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g0142 4 1650363 1669674 Mtr4g0142 4 1650363 1669674 ECH