Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0141 ATGGGTGAAGAAGTGAAATCTATTGTTCCTGAGTCTGTGTTGAAGAAGCAGAACAGGGAAGAACAATGGGCTTTGGCTAAAACTCAAGAATCTGAAGCTTCTAAGAAGAAGAGAGCCGAGAACCGTAAGCTGATTTACAGTAGGGCTAAGCAGTATTCTCAGGAGTATGAGGATAAGGAAAGAGAGTTGATTAGTTTGAAGCGCGAGGCTAAGCTGAAAGGTGGATTTTATGTTGATCCAGAGGCCAAGCTCTTGTTTATTATTCGCATCAGAGGTATAAATGCCATGGACCCCAAGACAAGAAAGATCTTGCAACTATTTCGATTGAGACAGATTTTCAATGGTGTTTTCCTTAAAGTTAACAAAGCAACAATGAACATGTTGCACAGGGTTGAGCCTTATGTGACTTATGGATACCCTAACTTGAAGAGTGTAAGGGAACTCATCTATAAGCGAGGGTATGGAAAGCTAGACAGGCAGCGAACTCCTCTCACTGACAACTCCATCATTGAGCAGGGACTGGGAAAGCATGGTATCCTATGCATTGAAGATCTTATCCACGAGATCTTGACTGTTGGACCACATTTCAAGGAAGCAAACAACTTCCTTTGGCCATTCAAGCTCAAAGCTCCATTGGGTGGCTTAAAGAAAAAGAGGAACCACTATGTTGAAGGTGGTGATGCTGGAAACCGTGAAAATTACATCAATGAGCTCATCAAAAGAATGAATTAA 732 0.418 MGEEVKSIVPESVLKKQNREEQWALAKTQESEASKKKRAENRKLIYSRAKQYSQEYEDKERELISLKREAKLKGGFYVDPEAKLLFIIRIRGINAMDPKTRKILQLFRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDRQRTPLTDNSIIEQGLGKHGILCIEDLIHEILTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIKRMN* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0141 243 Gene3D - 84 188 IPR036919 -
Mtr4g0141 243 Gene3D - 189 243 IPR036919 -
Mtr4g0141 243 SUPERFAMILY Ribosomal protein L30p/L7e 84 243 IPR036919 -
Mtr4g0141 243 ProSitePatterns Ribosomal protein L30 signature. 103 135 IPR018038 -
Mtr4g0141 243 Coils Coil 49 69 - -
Mtr4g0141 243 PANTHER 60S RIBOSOMAL PROTEIN L7 5 243 IPR039699 -
Mtr4g0141 243 Pfam Ribosomal protein L30p/L7e 85 135 IPR016082 -
Mtr4g0141 243 PANTHER 60S RIBOSOMAL PROTEIN L7-RELATED 5 243 - -
Mtr4g0141 243 Pfam Ribosomal L30 N-terminal domain 9 80 IPR012988 -
Mtr4g0141 243 TIGRFAM uL30_euk: 60S ribosomal protein uL30 10 243 IPR005998 GO:0000463|GO:0003735|GO:0022625
Mtr4g0141 243 CDD Ribosomal_L7_archeal_euk 84 243 IPR035808 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0141 Mtr-Chr4 1646138 1648693 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0141 4 243 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 84.167 1.27e-155 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0141 K02937 - gmx:100813342 427.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g0141 4 1646138 1648693 Mtr4g0141 4 1646138 1648693 ECH