Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0121 ATGGCTAAGAAATCTCAGAAAAATCTCAAAAACACTTCTACTTCTTCTTCCTCTTCCACCACCAAACGTAAACGTAAAAGCATTCCAAGAAACTCACCTCCACAAAGAAGCTCAGTTTATAGGGGTGTCACAAGACATCGTTGGACCGGTCGATATGAAGCTCATTTGTGGGATAAGAATTGCTGGAATGAATCACAAAGCAAGAAAGGAAGACAAGTATATTTAGGAGCATATGATGATGAAGAAGCTGCAGCACGTGCCTATGACTTGGCAGCATTGAAGTACTGGGGCCAAGACACAATTCTCAATTTTCAAGTATCAAATTATCAAGAGGAGCTCAAAGGGATGGAAGGCCAATCAAAAGAAGAATATATCGGATCCTTAAGAAGAAAAAGCAGTGGATTTTCTAGAGGAGTCTCAAAATACAGAGGTGTAGCAAGACACCACCACAATGGAAGATGGGAAGCTCGAATTGGTAGGGTCTTCGGCAACAAATATTTATACCTTGGAACTTATGCTACACAAGAAGAAGCCGCCACAGCGTATGACATGGCAGCAATAGAGTACAGAGGGCTTAACGCCGTTACAAACTTTGACCTTAGTCATTATATTAGTTACTTACATCCTAAACAACAGGACAACGACGATAGTAACAACCATAATAAAAAAGCTAGCAATAATCAAGAGCTGGATCTTAATCAAGAACTTGGTGGTGGTGTCACACCAGCATCTTCGACATTTGATCTTATCTTAGAATCGCCAAAATTCGAAGAAATGTTAGAAAATTCATCTTCATCGGTTGAAGATAGTTACACTCCACCGCCTGTCAAATCAACCATTCCACGTCGGACATTTCCAGAAGATATTCAAACTATTTTTGAAACACAAGATTCAAGTATCTACACTGAAAATGACGATGACAACATATTTGGTGAGTTAAGCTCAATTGCTGCACCAATTTTTCATTATGGGCTTGATGCTTGA 984 0.3953 MAKKSQKNLKNTSTSSSSSTTKRKRKSIPRNSPPQRSSVYRGVTRHRWTGRYEAHLWDKNCWNESQSKKGRQVYLGAYDDEEAAARAYDLAALKYWGQDTILNFQVSNYQEELKGMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSHYISYLHPKQQDNDDSNNHNKKASNNQELDLNQELGGGVTPASSTFDLILESPKFEEMLENSSSSVEDSYTPPPVKSTIPRRTFPEDIQTIFETQDSSIYTENDDDNIFGELSSIAAPIFHYGLDA* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0121 327 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR-RELATED 1 312 - -
Mtr4g0121 327 SUPERFAMILY DNA-binding domain 38 107 IPR016177 GO:0003677
Mtr4g0121 327 MobiDBLite consensus disorder prediction 1 42 - -
Mtr4g0121 327 ProSiteProfiles AP2/ERF domain profile. 141 199 IPR001471 GO:0003700|GO:0006355
Mtr4g0121 327 SUPERFAMILY DNA-binding domain 140 201 IPR016177 GO:0003677
Mtr4g0121 327 SMART rav1_2 141 205 IPR001471 GO:0003700|GO:0006355
Mtr4g0121 327 SMART rav1_2 39 111 IPR001471 GO:0003700|GO:0006355
Mtr4g0121 327 MobiDBLite consensus disorder prediction 263 282 - -
Mtr4g0121 327 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 312 - -
Mtr4g0121 327 Gene3D AP2/ERF domain 140 201 IPR036955 GO:0003700|GO:0006355
Mtr4g0121 327 Gene3D AP2/ERF domain 39 107 IPR036955 GO:0003700|GO:0006355
Mtr4g0121 327 Pfam AP2 domain 38 97 IPR001471 GO:0003700|GO:0006355
Mtr4g0121 327 Pfam AP2 domain 140 191 IPR001471 GO:0003700|GO:0006355
Mtr4g0121 327 CDD AP2 140 201 IPR001471 GO:0003700|GO:0006355
Mtr4g0121 327 MobiDBLite consensus disorder prediction 1 22 - -
Mtr4g0121 327 ProSiteProfiles AP2/ERF domain profile. 39 105 IPR001471 GO:0003700|GO:0006355
Mtr4g0121 327 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Mtr4g0121 327 PRINTS Ethylene responsive element binding protein signature 181 201 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0121 Mtr-Chr4 1441596 1448052 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0121 135 207 AP2-EREBP Transcription Factor Family AT5G57390 40.741 4.03e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Mtr4g0121 AP2 2.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0121 K09285 - pop:7455773 421.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g0121 4 1441596 1448052 Mtr4g0121 4 1441596 1448052 ECH