Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0114 ATGGGGCAAAAATTATATAACAAGTCAAAAGAACGCAAGGCCAAAAAAATCAAAGTTGAGAAGGATCATGATATGCTTGAGAATCCGCCGAGTTCTTTTTCTCTATTATGGGATAAGTTTGGCAAAAATTTTAAAGAAGTAAATCAAAATTCTGGTGTTAATAAAATGGCTGTTAAAGCATGGAACTCCATGAGTAATGAAGATAAACAACATTATTTGGATAAAGCAGCTAAGCGCAAGGCAAAACATGAGAAACTTAAGAAAAAAGGTACTATGTTTATCCCAAATTTAATTGATTTTGTGTTATTGAACTCAATTTCTAATAATATTCTTATTGTATGA 342 0.3041 MGQKLYNKSKERKAKKIKVEKDHDMLENPPSSFSLLWDKFGKNFKEVNQNSGVNKMAVKAWNSMSNEDKQHYLDKAAKRKAKHEKLKKKGTMFIPNLIDFVLLNSISNNILIV* 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0114 113 Gene3D High mobility group box domain 7 89 IPR036910 -
Mtr4g0114 113 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 26 91 IPR009071 -
Mtr4g0114 113 Pfam HMG (high mobility group) box 40 88 IPR009071 -
Mtr4g0114 113 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 7 90 - -
Mtr4g0114 113 SUPERFAMILY HMG-box 13 88 IPR036910 -
Mtr4g0114 113 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 7 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0114 Mtr-Chr4 1365754 1366388 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Mtr4g0114 HMG_box 4e-06 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0114 - K09269 mtr:MTR_4g007610 149.443