Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0109 ATGTATCATTTTCTCATTGCTAGATTCACTCATACTCATAGAACCCTTCACAGACACAATACTTTTTCTCTTTTCTCTGTTGTTTGCAACACAGATCAACATAAAGGTGACACCTTTACATTGTTAAGTCTCATAAACTCATGTGGGTTGTCCCCTGAAAAAGCCCTTAAACTTTCAACAAGGTTGCAACTCATAAACCCTAATGGCCCAAATGCTGTTATTCAACTTTTCAGAAGCTATGGTTTCTCTGATTCTCAGTTATCAAGCCTTGTTAAGAAACACCCTTTTGTACTTTTATCAAAATCTGATAAGACACTTTTGCCAAAGCTCAAGTTTTTGCAATCCATTGGGGCTTCAACCATTGATTTCCCCAAAATCTTGATTGGTGACAAGTTTTTGACAGCAAGCTTAGAGAAAACAATAATACCTCGTTACAAGATTCTTAAAAGCCTAGTTTGCGATGATAAAAAGGTAGTTTTAGCTTTGAGGCGTGGATCATGGAACTTTTATAATGATTCCATGGTTAATGATTCTGTTCCGAACATTGAGGTTTTGAGGAAGCTTGGTGTACCTCAAAGTTCTATTTCCAGTTTGGTATCCAATTTTCCTTGTGTAGCATTCACCAAGCATTCTAGATTTGTTGAGGCTGTTAATTCAGTCAAAGAAATGGGGTTTGATCCTTCGAAGTTGTATTTTGTTTTGGCGATTCGAGTGATTGTAAGTATGGACAAAGAAATTTGGGAATCAAAATTTAAGATTTTCGAGAAGTGGGGCTGGTCAAGAGATATTTGTCGTTTCGCTTTCCTAAAGTATCCTGAGTATGTGATGATCTCAGAGAAAAAAATTATGAAAACAATGGACTTCTTGGTGAAGGATGTGGGTCTTGCACCAGAAGACATTGCTACATGCCCTGGGATTCTGACCCGCAACTTGGAGAAGACACTTGTCCCTAAATGTGCTGTTATCAAGATTTTGAAGTCAAGAGGTTTAGTAAAGAGTGGTTTGCGTGTAAGTACCTTTATTATGACAAGTGAGGAAAAGTTTGTGCAGAAATATGTGACCCCATTTCAGAAAGATTTGCCATTGTTATTAGATGCATATAAAGTTCAGAAATCAGATTGA 1122 0.3708 MYHFLIARFTHTHRTLHRHNTFSLFSVVCNTDQHKGDTFTLLSLINSCGLSPEKALKLSTRLQLINPNGPNAVIQLFRSYGFSDSQLSSLVKKHPFVLLSKSDKTLLPKLKFLQSIGASTIDFPKILIGDKFLTASLEKTIIPRYKILKSLVCDDKKVVLALRRGSWNFYNDSMVNDSVPNIEVLRKLGVPQSSISSLVSNFPCVAFTKHSRFVEAVNSVKEMGFDPSKLYFVLAIRVIVSMDKEIWESKFKIFEKWGWSRDICRFAFLKYPEYVMISEKKIMKTMDFLVKDVGLAPEDIATCPGILTRNLEKTLVPKCAVIKILKSRGLVKSGLRVSTFIMTSEEKFVQKYVTPFQKDLPLLLDAYKVQKSD* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0109 373 Pfam mTERF 74 231 IPR003690 GO:0003690|GO:0006355
Mtr4g0109 373 Pfam mTERF 239 348 IPR003690 GO:0003690|GO:0006355
Mtr4g0109 373 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 20 369 - -
Mtr4g0109 373 Gene3D Transcription termination factor 3, mitochondrial 39 129 IPR038538 -
Mtr4g0109 373 Gene3D Transcription termination factor 3, mitochondrial 130 360 IPR038538 -
Mtr4g0109 373 PANTHER CGI-12 PROTEIN-RELATED 20 369 IPR003690 GO:0003690|GO:0006355
Mtr4g0109 373 SMART mt_12 265 296 IPR003690 GO:0003690|GO:0006355
Mtr4g0109 373 SMART mt_12 124 154 IPR003690 GO:0003690|GO:0006355
Mtr4g0109 373 SMART mt_12 230 260 IPR003690 GO:0003690|GO:0006355
Mtr4g0109 373 SMART mt_12 196 226 IPR003690 GO:0003690|GO:0006355
Mtr4g0109 373 SMART mt_12 88 119 IPR003690 GO:0003690|GO:0006355
Mtr4g0109 373 SMART mt_12 297 331 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0109 Mtr-Chr4 1326420 1328129 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Mtr4g0109 mTERF 1.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0109 K15032 - gmx:106799612 409.453