Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0085 ATGTTTGATTCTGGTTACAAGTCACAGTATATTGAAGGTCAGAAGGAGAAATTTGTGAGGTTGGATGATTTGGATTCCAATTCGTCAATGCCATCTAGCTCAAGTGGGATGAAGAAGTTAAGATTTAATTTAGATTGTTTGCCTTTTCTTATTCCCGGTCGCGGGAAAAAAAATTCGTCGAAATCGTTTCGAGTCGGAGTGAAAAAGGGATCAGATGGACTAATGAATATTGGAAGATCACTCAAAAGTGGAGTCACTTGGGGAGTTTTTCCAGAAGATCTTAAAGTGTCACAGAAAAAAGTATTTGATCCTCAAGATAAGAATCTTCTTTATTGGAACAAGTTTTTCGAGATTCTATGCATCCTTTCTGTAGCTTGTGATCCTTTCTTTTTTTATCTTCCTTATTTCAACCACAAATCATATTGTTTAGCCATAGATAACAATCTAGCGAAGTTTACTGTTATATTGAGAACAATATGTGATTTTATTTATCTCATTCGCATAAGTTTCCAATTCCGCACCGCCTTCATTGCACCTTCATCTCGAGTATTTGGAAGAGGTGAACTTGTCATAGATCCTGGATTGATCGCAAAGCGATATTTACAACGCTATTTCATTATTGACTTCTGGTCTGTGCTGCCGCTGCCACAGATGGTAGTGTGGAAGTATCTTTATAGTGCAAGACGCTGGAAGGTATTGGATACAAAAACATCACTATTGAGACATGTCATCATGCAATATTTTCCGAGAATGGTACGGTTCATACCTTTGGCTTCCGAAGTTAAAAAGACAGCTGGTGTTTTTTCTGAAAATGCATTGCTCGGTGCCATGTACTATTTGATCTGGTATATGCTTGCTAGCCATATAACGGGTTCTGTATGGTACTTGCTAGCGATAGAACGTAACGACACATGCTGGAAGAATGCATGTAAAGAAGTTGAAGGATGTAATTCAAATTTCTTGTATTGTGGAAGTTCAAGTAAGCATATACCAGGGTATGAAAGTTGGAGAAATGTGAGCCAATCTGTGCTTAAAAGTAAATGCTTTATTGAAGATGATAACTCGGCTTTCAACTATGGAATCTTTTCTCAAGCTATAGAATCTCATATTGTTGCTTCCATAGAAGTTTTCCCAAAATTTTGCTACTGTCTATGGTGGGGACTTCAGAATTTAAGTACACTTGGTCAGGGGCTTCTAACTAGTACCTACCCTGGAGAGGTTTTGTTTTCCATAGTAATAGCTATTATGGGGCTTGTGCTCTTTGCTCTTCTGATTGGAAACATGCAGACCTACCTTCAATCAATGTCGGTTCGTCTGGAGGAAATGAGGATCAAAAGGCGTGACTCCGAGCAGTGGATGCATCATCGCTTGCTTCCTCCGGACCTAAGGGAAAGAGTCAGACGCTACGACCAATACAAGTGGTTGAACACCCGAGGGGTCGATGAAGAAAATTTGGTTCAGAGTCTTCCAAAAGATCTTAGAAGAGATATCAAACGTCATCTTTGTTTGAATTTAGTCAGAAGGGTTCCTCTCTTTGCTAACATGGATGAACGCTTGCTTGATGCGATATGTGAGCGATTGAAACCGAGTTTATATACAGAGCGAACTTTCATAGTTAGGGAAGGTGATCCAGTTGATGAGATGTTCTTCATCATTCGTGGTCGTCTAGAGAGTGTTACTACAGATGGTGGAAGAAGTGGCTTCTTCAACAGAGGAGTTTTGAAGGAAGGTGATTTTTGTGGTGAAGAGTTGCTAACATGGGCATTGGATCCAAAATCTGCAGCAAGCTTACCATCATCAACAAGAACCGTGAAAGCTATGAGTGAGGTAGAGGCATTTGCTTTAGAAGCAGAGGAATTGAAGTTTGTTGCATCACAGTTTAGACACATACATAGTAGACAGGTTCAGCATACATTCCGTTTCTATTCGCAACAATGGCGAACATGGGCTGCAATCTATATTCAAGCTGCATGGAGGAAGCATTTAAGGCGAAGACGAAGGAAGGAGGAAGAAGAATACTACGAGGATTACGCGGGAAGTGATGATTCTGCAAGGGCGTTGGTTCCGGGTCCTGAAAGTTCGTCAAAATTTGGACTTAATACAACAGTCTATGCTTCTCGGTTTGCTGCTAACCTTCGTGGTCATAGACTTCGAGTGCCAAGTTCAAGAGACCTGGTGAATATCCCAAAGCCCTCAGAACCTGATTTCAGTGCTCTCAATGATAAAGAGTTATGA 2235 0.4049 MFDSGYKSQYIEGQKEKFVRLDDLDSNSSMPSSSSGMKKLRFNLDCLPFLIPGRGKKNSSKSFRVGVKKGSDGLMNIGRSLKSGVTWGVFPEDLKVSQKKVFDPQDKNLLYWNKFFEILCILSVACDPFFFYLPYFNHKSYCLAIDNNLAKFTVILRTICDFIYLIRISFQFRTAFIAPSSRVFGRGELVIDPGLIAKRYLQRYFIIDFWSVLPLPQMVVWKYLYSARRWKVLDTKTSLLRHVIMQYFPRMVRFIPLASEVKKTAGVFSENALLGAMYYLIWYMLASHITGSVWYLLAIERNDTCWKNACKEVEGCNSNFLYCGSSSKHIPGYESWRNVSQSVLKSKCFIEDDNSAFNYGIFSQAIESHIVASIEVFPKFCYCLWWGLQNLSTLGQGLLTSTYPGEVLFSIVIAIMGLVLFALLIGNMQTYLQSMSVRLEEMRIKRRDSEQWMHHRLLPPDLRERVRRYDQYKWLNTRGVDEENLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTERTFIVREGDPVDEMFFIIRGRLESVTTDGGRSGFFNRGVLKEGDFCGEELLTWALDPKSAASLPSSTRTVKAMSEVEAFALEAEELKFVASQFRHIHSRQVQHTFRFYSQQWRTWAAIYIQAAWRKHLRRRRRKEEEEYYEDYAGSDDSARALVPGPESSSKFGLNTTVYASRFAANLRGHRLRVPSSRDLVNIPKPSEPDFSALNDKEL* 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0085 744 SUPERFAMILY cAMP-binding domain-like 441 631 IPR018490 -
Mtr4g0085 744 SMART cnmp_10 511 642 IPR000595 -
Mtr4g0085 744 ProSiteProfiles cAMP/cGMP binding motif profile. 511 641 IPR000595 -
Mtr4g0085 744 MobiDBLite consensus disorder prediction 723 744 - -
Mtr4g0085 744 Pfam Ion transport protein 111 438 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Mtr4g0085 744 Gene3D - 114 436 - -
Mtr4g0085 744 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 12 739 - -
Mtr4g0085 744 CDD CAP_ED 511 642 IPR000595 -
Mtr4g0085 744 Gene3D Helix hairpin bin 438 502 - -
Mtr4g0085 744 SUPERFAMILY Voltage-gated potassium channels 104 433 - -
Mtr4g0085 744 ProSiteProfiles IQ motif profile. 647 676 IPR000048 GO:0005515
Mtr4g0085 744 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 12 739 - -
Mtr4g0085 744 Pfam Cyclic nucleotide-binding domain 532 621 IPR000595 -
Mtr4g0085 744 Gene3D Jelly Rolls 509 629 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0085 Mtr-Chr4 1016387 1019967 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0085 6 738 Ion Channels AT1G15990 67.824 0.0 989
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0085 K05391 - gmx:100810453 1217.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g0085 4 1016387 1019967 Mtr4g0085 4 1016387 1019967 ECH