Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0060 ATGAATCTTCAATGCCTAAAACCTTCTATGGATAGAAAACACAAAAATGATTCATCTCCTCAACTTGTACTTGATCTAAGTCTCTCTAGCAAGGATCCATGTGGTGATTCAAAGTCAGAACTCAACCTCCTTAATTGTTTCCATGCAAATTTATCGGAAAGCTCCTCCGAATCTAGTCATGAGAATGAACTTGATCCGAGAGTTTTTTCATGCAACTACTGCCAAAGAAAGTTTTATAGTTCTCAAGCACTTGGAGGACACCAAAATGCACACAAGCGCGAAAGAACTTTGGCGAGAAGAGGCTATACAACTAGCATGGCTTCTTCTCTACCTTCTTATGGCTTGTGTAACAAATCACTTGGCATTCAAGTGCATTCTATGATTAACAAACCTTCTTATCAAACACCCCTTTTTGGATTTTGTTCAAATGGACAAAATGGATGGAGAAGACAAAACTTTGATTCACAACCAGCAATTGGAAAGCTTCCATTAGGAAATTTTCATGTGAGGGATGAAGTTGAATCATCCTTTGGTGGTGGCATTTCAAGGGTAGCCATGTTTCCTAAAAGGCTTGCAAATGAAGGACTTGGAGGTTACTTATTCGATAGTAACACTTCTCATTTGCAGTCTAAACAAGAGAAGTTGCAAAAACTTGACTTATCTCTTAAGCTCTAA 675 0.3822 MNLQCLKPSMDRKHKNDSSPQLVLDLSLSSKDPCGDSKSELNLLNCFHANLSESSSESSHENELDPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLARRGYTTSMASSLPSYGLCNKSLGIQVHSMINKPSYQTPLFGFCSNGQNGWRRQNFDSQPAIGKLPLGNFHVRDEVESSFGGGISRVAMFPKRLANEGLGGYLFDSNTSHLQSKQEKLQKLDLSLKL* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0060 224 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 224 IPR044246 GO:0009788
Mtr4g0060 224 MobiDBLite consensus disorder prediction 1 20 - -
Mtr4g0060 224 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Mtr4g0060 224 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 96 IPR013087 -
Mtr4g0060 224 Gene3D Classic Zinc Finger 48 111 - -
Mtr4g0060 224 SUPERFAMILY beta-beta-alpha zinc fingers 66 96 IPR036236 -
Mtr4g0060 224 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0060 Mtr-Chr4 712011 713067 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0060 13 224 C2H2 Transcription Factor Family AT1G80730 38.750 5.98e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr4g0060 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0060 - - mtr:MTR_4g006575 455.292