Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0055 ATGGGTGGCGGCCAAGAGAATCGTCCTCCTCCTCCGCAGTATCAAGGCGGTTGGAATTCGAGGGAGGCTCCGGTCATGAAGAAAGGTGCTACAAATAGAACTGTTTTCAACCCTGTGGTGGCTGATGAAACTCAACATACAAAGCAATTGTCTGCTGTTCCTTCTAAGCCGAGTGCTGGGAACCTCCGGTCGCCTATTTGCAGCATCATGGGTGATGCATCCTCCGGCAAAACCATGCTTCTTCATTGTATTCGAGGTAGTAATGTTCAACAAGGTCATGAAGCTTGCAGTTTCACACACTATCCTGCTCAGGAAATCCGTGGAAGAAGTCTACTTGTTATTGATGCCCCATGCCACCAATCATTCAAGCGTTCAGGTCTATGTGATATCGCAATTTTGGTTGTAGACATTATGCATGGCATACAGCAACAAACTATAGATTCACTCGATCTATTAAAAAGGACCAACACAGACTTCATCATTGTCTTGAATAAGGTGGATAGGATTTGTGCCTGGCAAACATGTCGCAATGCTCCAATTCGTGAAGCATTGATGCAGCAGTATGCGAGTGCTAAATATGAGTTTCGTAGGAGGGTCGTTAAGATTGTTTCTCAGTTCAGGATGCTTGGCGTAAATGCTCAATTGTATTATGAAAACAATACAATGGGAGAAACATTCAGCATTGTGCCGACAAGTGCAATAAGTGGTGAAGGAATCACGGACATGTTATTTCTATTGTTTGGTTGGACCCAAAAGACCATGATCGAGAAACTTACTTACAGTGAAGACGTACAGTGTACTGTTTTGGAAGTCAAGGTTATTGAAGGCTATGGAACTACTATCGATGTTGTTTTAGCTCAAGGTGTTCTTCGTCGTGGTGATCAAATAGTTGTGTCTGGAATGAAGGGTCCAATTGTTACTACAATTCGAGCTTTATTGACACCTCATCCAATGGAGGAACTTTGTATTAAGGGATCATTTATGCATCACAAAGAAATCAAAGCTGTGATGGGCGTCAAGATCACTGCCCAGGGACTTGAACATGCTATTGCTGGTGCTAGTTTATATTTGGTGAAGCCTGATGATGATTTGGAATATGTTAAACAAGTGGCCATGGAAGATGTGGAGTCAGTCTTGAGCAGGATAGAAGGTAGTGGTGAGGGCGTTTGTGTCGAGGCACCTAGACTTTTGAAGAAACTTTAG 1203 0.4323 MGGGQENRPPPPQYQGGWNSREAPVMKKGATNRTVFNPVVADETQHTKQLSAVPSKPSAGNLRSPICSIMGDASSGKTMLLHCIRGSNVQQGHEACSFTHYPAQEIRGRSLLVIDAPCHQSFKRSGLCDIAILVVDIMHGIQQQTIDSLDLLKRTNTDFIIVLNKVDRICAWQTCRNAPIREALMQQYASAKYEFRRRVVKIVSQFRMLGVNAQLYYENNTMGETFSIVPTSAISGEGITDMLFLLFGWTQKTMIEKLTYSEDVQCTVLEVKVIEGYGTTIDVVLAQGVLRRGDQIVVSGMKGPIVTTIRALLTPHPMEELCIKGSFMHHKEIKAVMGVKITAQGLEHAIAGASLYLVKPDDDLEYVKQVAMEDVESVLSRIEGSGEGVCVEAPRLLKKL* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0055 400 MobiDBLite consensus disorder prediction 1 24 - -
Mtr4g0055 400 Pfam Elongation factor Tu domain 2 278 356 IPR004161 GO:0005525
Mtr4g0055 400 CDD aeIF5B_II 264 373 - -
Mtr4g0055 400 Pfam Elongation factor Tu GTP binding domain 104 246 IPR000795 GO:0003924|GO:0005525
Mtr4g0055 400 Gene3D Translation factors 262 380 - -
Mtr4g0055 400 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 5B 44 393 - -
Mtr4g0055 400 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 44 393 IPR015760 -
Mtr4g0055 400 Gene3D - 57 261 IPR027417 -
Mtr4g0055 400 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 330 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0055 Mtr-Chr4 615422 619914 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0055 42 396 Eukaryotic Initiation Factors Gene Family AT1G76810 58.201 4.58e-146 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0055 K03243 - gmx:100814875 471.47