Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0016 ATGAAGAAAGCAAGTGATACAAATGGAACTATTTCCAACCCCATGGGTGAAGAAACTCAAGATAGAAAGCAGGCCAAAGTTGTGGTTGAGGACAAAAAGAAAAACCATGATTCACAACACTCTGCTGTGCCTTGTAAGCCGGGTGATGGGAACCTACGGTCGCCTATTTGCTGCATCATAGGTGATGTCAACACTGGAAAAACCAAGCTTCTGGGTGGTATTCGAGGTAACAATTTTCAAGAAGGCGGTATCGACCAACAGAGTGGCACAACATACTTTCCTGTCCATGGAAGTAGGCGTCTACTGGTTATTGATACCCCAGGCCACCAATCATTCAATAACTCAATTTCTTGGGGTTCAAGTCTATGTGATATTGCAATTTTGGTTGTAGATATTATGCATGGCTTAGACCCAGAAACTGTAGAGTCATTCCGTCTACTAAAAACGAGGAACACACAATTCATTGTTGCATTGAATAAGGTGGACAGGATTTGTGCCTGGCAAACATGTCGTAATGCTCCAATTCGTGAAGCATTGATGCAACAGTATGGGAGTGCTAAATACGAGTTTCGTAGGAGGGTCATTAAGATTATTTCTCAGTTCAGGATGCTCGGTGTAAATACTCAATTGTATTATGAAAACAAAACAATGGGAGAAACATTCAACATTGTGCCGACAAGTGCAATAAGTGGTGAAGGAATCCCAGACATGTTATTTCTATTGTTTCAGTGGACCCAAAAGACCCAAATTGAGAAATTTACATACAGTGAAGATGTGCAGTGTACTGTTTTGGAAGTCAAGGTTATTGAAGGCTATGGAACTACTATTAATGTTGTTTTAGTTAATGGTGTTCTTCATGAAGGAGATCAAATAGTTGTATCTGGAATGAAGGGTTCAATTGTTACCACAATCCAAGCTTTATTAAGACCTCATCCAGTGAAGGAACTTCTTGTTAAGGGATCGTATATACACGACAAAGAAATCAAAGCTGTGATGGGAATCAAGATTACTGCCCAGGGACTTGAACATGCTATTGCTGGCTCTAGTTTATATGTGGTGAAGCCTGATGATGATTTAGAATATTTTAAAAAAGCGGCCTTGGAAGACGTGGAGTCGGTCTTGAGCAGGTTTGAGAGGAGTGGCGAGAGCATTTATGTTCAGGCTACAATACCTGGCTCATTATTGAAAAGAGGAGTAATGAATTTTAAGAAAACTCCAGAAGTTAATATTCCTGTCAGTGCTATAGATCATGTACATAAGAAAGATGTGAAGAAGGCCAGTGCAAGAGCAATGCTTGAAAAGAACGTCCAGGAGAATTCTACTATATTGACTACGTTTGATGTCAAAGTCACCCCTGAATATAGGGAACTTGCAAGACAGTTTAAGGTTTACACCCACAACATTAAGGAAGAGAAAGGGAAAGAATCTGCTGATGAGGCCGACTTCTCATGCATGGTAGTTAAAATTCGAAATTGA 1476 0.4011 MKKASDTNGTISNPMGEETQDRKQAKVVVEDKKKNHDSQHSAVPCKPGDGNLRSPICCIIGDVNTGKTKLLGGIRGNNFQEGGIDQQSGTTYFPVHGSRRLLVIDTPGHQSFNNSISWGSSLCDIAILVVDIMHGLDPETVESFRLLKTRNTQFIVALNKVDRICAWQTCRNAPIREALMQQYGSAKYEFRRRVIKIISQFRMLGVNTQLYYENKTMGETFNIVPTSAISGEGIPDMLFLLFQWTQKTQIEKFTYSEDVQCTVLEVKVIEGYGTTINVVLVNGVLHEGDQIVVSGMKGSIVTTIQALLRPHPVKELLVKGSYIHDKEIKAVMGIKITAQGLEHAIAGSSLYVVKPDDDLEYFKKAALEDVESVLSRFERSGESIYVQATIPGSLLKRGVMNFKKTPEVNIPVSAIDHVHKKDVKKASARAMLEKNVQENSTILTTFDVKVTPEYRELARQFKVYTHNIKEEKGKESADEADFSCMVVKIRN* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0016 491 Pfam Elongation factor Tu GTP binding domain 80 244 IPR000795 GO:0003924|GO:0005525
Mtr4g0016 491 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 20 486 IPR015760 -
Mtr4g0016 491 Gene3D - 383 465 IPR036925 -
Mtr4g0016 491 MobiDBLite consensus disorder prediction 19 40 - -
Mtr4g0016 491 CDD aeIF5B_II 259 364 - -
Mtr4g0016 491 Gene3D Translation factors 257 375 - -
Mtr4g0016 491 Gene3D - 48 256 IPR027417 -
Mtr4g0016 491 MobiDBLite consensus disorder prediction 1 18 - -
Mtr4g0016 491 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 52 250 IPR000795 GO:0003924|GO:0005525
Mtr4g0016 491 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 359 463 IPR036925 -
Mtr4g0016 491 MobiDBLite consensus disorder prediction 1 46 - -
Mtr4g0016 491 Pfam Elongation factor Tu domain 2 273 351 IPR004161 GO:0005525
Mtr4g0016 491 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 5B 20 486 - -
Mtr4g0016 491 TIGRFAM small_GTP: small GTP-binding protein domain 57 165 IPR005225 GO:0005525
Mtr4g0016 491 CDD IF2_eIF5B 55 247 - -
Mtr4g0016 491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 53 324 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0016 Mtr-Chr4 203885 208962 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0016 48 491 Eukaryotic Initiation Factors Gene Family AT1G76810 60.499 3.47e-180 538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0016 K03243 - gmx:100814640 572.778