Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0009 ATGTTGTTATTGGTGGCTATGGTTGTTGCTGTAACGATTAGCATCAAACAAAACCAAAATGATGTTAAGGACGATTTTAAGGATGATTTAGCAGACAACAAAAAGAATCATGTTGCTTCTACATTGAAAGCGGTGCAAACTATTTGTCATCCCACCACTTACAAGAAGGAATGTGTTGAATCCCTCGTAGTGGAGGCTGAGGCTGGCAATGTCACCGACCCAAAAGAACTCATTAAAATAGCATTCAATGTTACCATCAATAAAATTGGTGAAAAACTCAAGGAAACTGAAATGTTTAGTGAGATCGAGAAGGATTCTAGATCCAAGGATGCACTTGATACTTGCAAGCAGCTTATGCATCTTTCAATTGGTGAATTCACAAGGTCACTTGATGGAATAAGCGAGTTTGATCTAAAACATATGAACCAAATTCTCATGAATTTGAAGGTTTGGCTCAATGGTGCTGTCACATACATGGATACATGCTTAGATGGATTTGAAAACACTACCGGTGACGCTAGTAAAAAAATGAAACACTTATTAACATCAAGCATACACATGAGTAGCAATGTCCTTGCTATTGTTTCAAATTTCGCCGACACAGTCTCTGATATGAACGTATCCAAACTTTTTGGACGTTGTCTCCTTCAAGATTCTGAGATTCCTTCTTGGGTTGAACATCGCATACTCCTTGATGCAATGACAAACAAATCAAAACCAAAGCCTAATGTTACCGTAGCTTTAGATGGTAGTGGTGATTTTAAGAGCATAAATGAGGCATTGAAAAAGGTTCCCGGTGAGGAGGATGAAACACCATTTGTGATCTACATTAAGGAAGGTGTTTACCGAGAGTATGTTGAAGTTTTAAAAAATATGACACATATTGTGTTTGTTGGTGATGGTGGTAAGAAGTCAATAATCACTGGCAACAAAAACTATATGGATGGAGTTACCACCTACCATACCACCACTGTTGCTATTCAAGAAGATCACTTTACCGCCATTAACATGGGTTTTGAGAATTCAGCTGGTCCACAAAAACATCAAGCAGTGGCACTAAGAGTTCAAGGAGATAAGGCTATCTTCTTCAATTGCTCAATGGATGGATATCAAGACACACTTTATGTACACGCCATGCGTCAATTTTACCGCGACTGTACTATTTCAGGTACCATCGACTTTGTCTTTGGTAATGCAGAATCGGTATTTCAAAACTGCAAATTCGTGGTCCGAAAGCCTATGTCAAACCAACAATGCATTGTGACCGCACAAGGAAGAAAAGAAATAACTGCACCATCAGCAATAGTCATCCAAGGAGGCTCTATTGTTGCTGACCCTGAGTTCTATCCAGTCAGGTTTGACCACAAGTCCTACCTAGCCTGTCCATGGAAGAACTTCTCAAGGACTATCATCATGGATACATTCATCGATGATTTGATTCATCCCGATGGTTTTTTGCCATGGCATACAGAAGAGGGACCTATTAATATGGACACTTGCTACTATGTTGAATACCATAACTATGGCCCTGGTTCAGACAAATCAAAGCGTGTGAAATGGGCTGGAATCTATAACATCAATACAAAGGCTGCACAAAAGTTTGCACCATCCAAGTTCTTCCATGGTGGTGACTGGATTAAGGACACTGGAATTCCTTACTATCCAAATATACCGGAACACAAGAAGCACGAAAAGACAGTGCCTAAATGGTGA 1713 0.397 MLLLVAMVVAVTISIKQNQNDVKDDFKDDLADNKKNHVASTLKAVQTICHPTTYKKECVESLVVEAEAGNVTDPKELIKIAFNVTINKIGEKLKETEMFSEIEKDSRSKDALDTCKQLMHLSIGEFTRSLDGISEFDLKHMNQILMNLKVWLNGAVTYMDTCLDGFENTTGDASKKMKHLLTSSIHMSSNVLAIVSNFADTVSDMNVSKLFGRCLLQDSEIPSWVEHRILLDAMTNKSKPKPNVTVALDGSGDFKSINEALKKVPGEEDETPFVIYIKEGVYREYVEVLKNMTHIVFVGDGGKKSIITGNKNYMDGVTTYHTTTVAIQEDHFTAINMGFENSAGPQKHQAVALRVQGDKAIFFNCSMDGYQDTLYVHAMRQFYRDCTISGTIDFVFGNAESVFQNCKFVVRKPMSNQQCIVTAQGRKEITAPSAIVIQGGSIVADPEFYPVRFDHKSYLACPWKNFSRTIIMDTFIDDLIHPDGFLPWHTEEGPINMDTCYYVEYHNYGPGSDKSKRVKWAGIYNINTKAAQKFAPSKFFHGGDWIKDTGIPYYPNIPEHKKHEKTVPKW* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0009 570 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 198 IPR035513 -
Mtr4g0009 570 ProSitePatterns Pectinesterase signature 2. 388 397 IPR033131 -
Mtr4g0009 570 Pfam Plant invertase/pectin methylesterase inhibitor 44 194 IPR006501 GO:0004857
Mtr4g0009 570 Gene3D - 237 557 IPR012334 -
Mtr4g0009 570 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 44 198 IPR035513 -
Mtr4g0009 570 Pfam Pectinesterase 243 542 IPR000070 GO:0030599|GO:0042545
Mtr4g0009 570 PANTHER PECTINESTERASE 2 557 - -
Mtr4g0009 570 SMART PMEI_2 40 194 IPR006501 GO:0004857
Mtr4g0009 570 CDD PMEI-like_3 47 199 - -
Mtr4g0009 570 SUPERFAMILY Pectin lyase-like 240 555 IPR011050 -
Mtr4g0009 570 TIGRFAM PME_inhib: pectinesterase inhibitor domain 41 197 IPR006501 GO:0004857
Mtr4g0009 570 PANTHER PECTINESTERASE 2 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0009 Mtr-Chr4 117079 118903 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0009 2 553 Carbohydrate Esterase AT3G05610 47.207 0.0 549
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0009 K01051 - gmx:100815272 846.269