Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0008 ATGGCTGGAGGAGATGCACAAAAAGGAAGTAGAATCGCCATAATTGGCGTATCTACCTTGTTATTGGTGGCTATGGTTGTTGCTGTAACGATTAGCATCAAACAAAACCAAAATGATGTTAAGGACGATTTTAAGGATGATTTAGCAGACAACAAAAAGAATTATGTTGCTTCTACATTGAAAGCGGTGCAAACTATTTGTCATCCCACCACTTACAAGAAGGAATGTGTTGAATCCCTCGTAGTGGAGGCTGAGGCTGGCAATGTCACCGACCCAAAAGAACTCATTAAAATAGCATTCAATGTTACCATCAATAAAATTGGTGAAAAACTCAAGGAAACTGAAATGTTTCGCGAGATCGAGAAGGATCCTAGATCCAAGGATGCACTTGATACTTGCAAGCAGCTTATGCATCTTTCAATTGGTGAATTCACAAGGTCACTTGATGGAATAAGCGAGTTTGATCTAAAACATATGAACCAAATTCTCATGAATTTGAAGGTTTGGCTCAATGGTGCTGTCACATACATGGATACATGCTTAGATGGATTTGAAAACACTACCGGTGATGCTAGTAAAAAAATGAAACACTTATTAACATCAAGCATACACATGAGTAGCAATGTCCTTGCTATTGTTTCAAATTTCGCCGACACAGTCTCTGATATGAACGTATCCAAACTTTTTGGACGTCGTCTCCTTCAAGATTCTGAGATTCCTTCTTGGGTTGAACATCGCATACTCCTTGATGCAATGACAAACAAATCAAAACCAAAGCCTAATGTTACCGTAGCTTTAGATGGTAGTGGTGATTTTAAGAGCATAAATGAGGCATTGAAAAAGGTTCCCGGTGAGGAGGATGAAACACCATTTGTGATCTACATTAAGGCAGGTGTTTACCGAGAGTATGTTGAAGTTTTAAAAAATATGACACATATTGTGTTTGTTGGTGATGGTGGTAAGAAGTCAATAATCACTGGCAACAAAAACTATATGGATGGAGTTACCACCTACCATACCACCACTGTTGCTATTCAAGGAGATCACTTTACCGCCATTAATATGGGTTTTGAGAATTCAGCTGGTCCACAAAAACATCAAGCAGTGGCACTAAGAGTTCAAGGAGATAAGGCTATCTTCTTCAATTGCTCAATGGATGGATATCAAGACACACTTTATGTACACGCCATGCGTCAATTTTACCGCGACTGTACTATTTCAGGTACCATCGACTTTGTCTTTGGTAATGCAGAATCGGTATTCCAAAACTGCAAATTCGTGGTCCGAAAGCCTATGTCAAACCAACAATGCATTGTGACCGCACAAGGAAGAAAAGAAATAACTGCACCATCAGCAATAGTCATCCAAGGAGGCTCTATTGTTGCTGACCCTGAGTTCTATCCAGTCAGGTTTGACCACAAGTCCTACCTAGCCCGTCCATGGAAGAACTTCTCAAGGACTATCATCATGGATACATTCATCGATGATTTGATTCATCCCGATGGTTTTTTGCCATGGCATACAGAAGAGGGACCTATTAATATGGACACTTGCTACTATGTTGAATACCATAACTATGGCCCTGGTTCAGACAAATCAAAGCGTGTGAAATGGGCTGGAATCTATAACATCAATACAAAGGCTGCACAAAAGTTTGCACCATCCAAGTTCTTCCATGGTGGTGACTGGATTAAGGACACTGGAATTCCTTACTATCCAAATATACCGGAACACAAGAAGCACGAAAAGACAGTGCCTAAATGGTGA 1767 0.4018 MAGGDAQKGSRIAIIGVSTLLLVAMVVAVTISIKQNQNDVKDDFKDDLADNKKNYVASTLKAVQTICHPTTYKKECVESLVVEAEAGNVTDPKELIKIAFNVTINKIGEKLKETEMFREIEKDPRSKDALDTCKQLMHLSIGEFTRSLDGISEFDLKHMNQILMNLKVWLNGAVTYMDTCLDGFENTTGDASKKMKHLLTSSIHMSSNVLAIVSNFADTVSDMNVSKLFGRRLLQDSEIPSWVEHRILLDAMTNKSKPKPNVTVALDGSGDFKSINEALKKVPGEEDETPFVIYIKAGVYREYVEVLKNMTHIVFVGDGGKKSIITGNKNYMDGVTTYHTTTVAIQGDHFTAINMGFENSAGPQKHQAVALRVQGDKAIFFNCSMDGYQDTLYVHAMRQFYRDCTISGTIDFVFGNAESVFQNCKFVVRKPMSNQQCIVTAQGRKEITAPSAIVIQGGSIVADPEFYPVRFDHKSYLARPWKNFSRTIIMDTFIDDLIHPDGFLPWHTEEGPINMDTCYYVEYHNYGPGSDKSKRVKWAGIYNINTKAAQKFAPSKFFHGGDWIKDTGIPYYPNIPEHKKHEKTVPKW* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0008 588 PANTHER PECTINESTERASE 10 575 - -
Mtr4g0008 588 PANTHER PECTINESTERASE 10 575 - -
Mtr4g0008 588 SMART PMEI_2 58 212 IPR006501 GO:0004857
Mtr4g0008 588 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 62 216 IPR035513 -
Mtr4g0008 588 ProSitePatterns Pectinesterase signature 2. 406 415 IPR033131 -
Mtr4g0008 588 SUPERFAMILY Pectin lyase-like 258 573 IPR011050 -
Mtr4g0008 588 CDD PMEI-like_3 65 217 - -
Mtr4g0008 588 Pfam Pectinesterase 261 560 IPR000070 GO:0030599|GO:0042545
Mtr4g0008 588 Pfam Plant invertase/pectin methylesterase inhibitor 62 212 IPR006501 GO:0004857
Mtr4g0008 588 TIGRFAM PME_inhib: pectinesterase inhibitor domain 59 215 IPR006501 GO:0004857
Mtr4g0008 588 Gene3D Invertase/pectin methylesterase inhibitor family protein 58 216 IPR035513 -
Mtr4g0008 588 Gene3D - 255 575 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0008 Mtr-Chr4 113766 115650 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0008 5 571 Carbohydrate Esterase AT3G05610 47.018 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0008 K01051 - gmx:100815272 872.078