Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4473 ATGTCATCATTGCAGCATAGGAATTTCTTGGAAGCTCCAACTAGAGACGGCACAAGTATAATAGTAATGAAATGTTATTGGTTGAATGGTAGAGTAAGAGAAAGAAAGAAAGAGAGAATGAAAGTACCTAGCCCGACTCGGAAGCAATCTGTTGGAGATCGTCACATGATATCGCCTACTCGCCACAATATGTCACGTTCCGCACGGAGGAGGAAGAACAGTGGTCATTGGTGGTTGTCATCAATATCATGGATGAAGAAAGAGGTTGACTCATATGATATGACTCATCATACTCACCTCTCTTCTGATAGTCCCTACTACAAGGGTCTTACCGATCAATCTCTTGCTATTCCTCATGAAGAATACCAAGAGGATGACAACAACAATATCTCTTCATCACTGCGACCTATCCTCCTTTCATCATCCCCCCACAGTAGTCCTTACTACAAAGGTCTTACCGATTATTCTCTTGTCATTGATGCCTCTTGGGCCACTCCTCATCCCCACCCCCATCATAACTCATCCCTTTCTTGTTATCACGACTCAAGTCCATACTATAGGGGTCTTATTGCTCTTCCTGTTCCCACTTCCCCCTCCTCTCTCTTCTCCCTCAACATCAATTTCAATACCACCCCCACCACCCAACCACCAACTCATGATTTTGTTGTCTTTTTAAGTCCAGAAGATCAATCACTCATGGTAACAGAACCAGAAGCAACTTTGGAGGAGGCGATGGTGTTGATCCATCCCGATATCCAAGGGAAGCCTTTGAGGGTTAACAATCCGTCATCATCACAAGCAACTTTGGAGAAGATGGACGACGGTAGTGACGATGTTGAAGGCGGGAAGCCTTTGAGGGTTAATTATGAATCAGAAACTATTCCAGAGAAAACAATTTTGTGTGACGATGTTGTGTTGTTGGTTGAAGAGCATAAGAGAAAGCCTTTGAGGGAGAGAGTAACATCAAATTCGGAGACAGTATTGTCACAACAAGAAAATGCTGACAAAACAGATTTGGGTATGGAGGAGGAGATGGAATTGGTGATGATTGAACAAGAGAAGCCATTGAGAGAGAGTCGTGCGTCACAAGTTGGGAATGAGAATGTACTAATAAATACAGAGACAACAGGTTTGAAAGAGGAACTCAGAGACTTTTGGTTGGGTGGTCAAAAGACTGCTTCTGAACAAACAGTGTCAATGGAATTACCTTGTGAGCATAAGTCGATGAACACGGCTGTGGAAGGAAATATGTATGAGTATCTGTGGGCAACCAAATACCAGCCCAAGATATTGGCAGACTTCATCTGCAACAGAGATAAAGCACTTCAGCTGAAAGCATTGGTTAAAGGTGGGTGTGGCTGTAATCATTTTATATTTGAAGGACCCCCAAATGTAGGAAAGAGATCCATGATACGGGCTATGCTTCGGGAGGTATTTGGCGCTGACGGAGTGCAGGTCACAGAAGAATATAAAGACTTCAACTTGAAGGGAGAAATGGTCGAAAATCTCAAACTGCGTGTGCAGAAATCACTCCATCATGTTGAGGTAAATCTCTCAGAAGCAAAGGGATATGAAAAGAATGTGATTGTTGAGTTATTCAAGGAAACATATGGTAAGGTGATCAATAGTTCACTGCCTTGTAGCCCAGAAAACTGTCAAGCAATAATTTTGTATGAGGCGGAGAAGCTATCGTTAGAATCGGTGTTGTATATAAAGTGGCTGGTAGAAAAGTATAAAGGGTGTAATAAGCTGTTCTTTTGTTGCTCTGATGAATCAAGGCTACAACCAATCCAATCATATTGCACCACGGTCCGCCTCTCATCACCATCAACCCAACAGATTGTCAAGATTTTGGAATATATTGTACAAGAAGAAGGAATAAAATTATCACACGAGTCAATCAAGAGTATAGTTTTAAGGTCCAAAAACAATCTCCGTCAAGCCATTCGTTCATTGGAGGCCACTTACCGAAACAAGAATGCCCTCAACGACGATGATTTAGTTTTAACTGGATGGGAGGATGATATTTTGAATATTGCTAGAAATATAATCACAGAGCAGAGTCCTAGACAGTTGTACGCCATTCGAAAAAAGCTTCAAAGTCTTATGATTCATGATGTTCCTCCTGACTTTATTTACAAGTCTTTGGTTGCAAACTTGACCAGTCTAGTTGATGACTCGCTATGCTCAGGGGTTACCAAACTTGGCAAGGACTACACTAAAGGTGGTGCAATCAAATTTGAAGGCGTGAAGCATTATGCTCAAAACAAACAAGGAGGATCTGATGAAAAGAACAATAAACTAACAAAAAAGAATGCAATGAACTACTTAAAAGTTGAAGAATTTATAGCAAAATTCATGAGCTGGTACAAGAATTCGTGTAAAAGTAATGATCATGTGTAA 2403 0.412 MSSLQHRNFLEAPTRDGTSIIVMKCYWLNGRVRERKKERMKVPSPTRKQSVGDRHMISPTRHNMSRSARRRKNSGHWWLSSISWMKKEVDSYDMTHHTHLSSDSPYYKGLTDQSLAIPHEEYQEDDNNNISSSLRPILLSSSPHSSPYYKGLTDYSLVIDASWATPHPHPHHNSSLSCYHDSSPYYRGLIALPVPTSPSSLFSLNINFNTTPTTQPPTHDFVVFLSPEDQSLMVTEPEATLEEAMVLIHPDIQGKPLRVNNPSSSQATLEKMDDGSDDVEGGKPLRVNYESETIPEKTILCDDVVLLVEEHKRKPLRERVTSNSETVLSQQENADKTDLGMEEEMELVMIEQEKPLRESRASQVGNENVLINTETTGLKEELRDFWLGGQKTASEQTVSMELPCEHKSMNTAVEGNMYEYLWATKYQPKILADFICNRDKALQLKALVKGGCGCNHFIFEGPPNVGKRSMIRAMLREVFGADGVQVTEEYKDFNLKGEMVENLKLRVQKSLHHVEVNLSEAKGYEKNVIVELFKETYGKVINSSLPCSPENCQAIILYEAEKLSLESVLYIKWLVEKYKGCNKLFFCCSDESRLQPIQSYCTTVRLSSPSTQQIVKILEYIVQEEGIKLSHESIKSIVLRSKNNLRQAIRSLEATYRNKNALNDDDLVLTGWEDDILNIARNIITEQSPRQLYAIRKKLQSLMIHDVPPDFIYKSLVANLTSLVDDSLCSGVTKLGKDYTKGGAIKFEGVKHYAQNKQGGSDEKNNKLTKKNAMNYLKVEEFIAKFMSWYKNSCKSNDHV* 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4473 800 Coils Coil 642 662 - -
Mtr3g4473 800 CDD HLD_clamp_RFC 609 667 - -
Mtr3g4473 800 Gene3D - 420 609 IPR027417 -
Mtr3g4473 800 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 418 666 IPR027417 -
Mtr3g4473 800 SUPERFAMILY post-AAA+ oligomerization domain-like 671 737 IPR008921 GO:0003677|GO:0006260
Mtr3g4473 800 MobiDBLite consensus disorder prediction 256 282 - -
Mtr3g4473 800 MobiDBLite consensus disorder prediction 37 69 - -
Mtr3g4473 800 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 173 795 - -
Mtr3g4473 800 Gene3D - 671 790 - -
Mtr3g4473 800 PANTHER OS10G0574500 PROTEIN 173 795 - -
Mtr3g4473 800 Gene3D - 610 669 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4473 Mtr-Chr3 58716581 58723918 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4473 421 792 Core DNA Replication Machinery Family AT5G27740 31.565 5.98e-47 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4473 K10756 - gmx:102664389 650.973