Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4471 ATGAAAATGGTGGTGGTTGCGCAAGGTGTTTGTGGTAAAGCGTTGCTGTTTGGCATCGGAGTTGGAGTGAGACCCAGAAGACCCACTAAACAGTTTGTCTTCTTCGTTTCTTCTAATTCGAAAGACAAAACCACGAGTTTCGGAAGACTAAAAGTTGAGAAAGTGAATGCTCTCATCCACAGAACCAAGCAAAACACCACAAAACGCAAACAACTACTACAACCAGAAGATGAAGATGAAGACAATTCTGCATCTGCAACTGCAACAACACGACGACAACAACAACAACAACAACAACAACACACTCATTCGAGAGTTGGATGGGGAGACAATAGGGTTAGCAGTAAATCATTGGCGTTGGCTTCGGAGGACACCAACTTTTTCAGTCTAAAATCATTTAAAGGCATTGGATGCGCTGATTTCATGATTGAATCTCTCCATAACCTCTCTTTAACTCGCCCTTCCAACATACAGGCCATGTCATTTCCTCCTGTTATTGCCGGTAAGTCTTGTATCATTGCTGACCAGAGTGGTTCTGGAAAGACATTAGCTTATCTTGTACCAATCATTCAACGTCTCAGACAACAAGAACTACAAGGACTTCATAAATCATCTTCACAATCTCCTACTCTTCTTATACTCGCACCCACTGCTGAGTTAGCTTCTCAGGTCTTCCATAATTGTCGATCAATCTCTAAATCTGGTGTTGTTCCATTCAAATCTATGCTTGTCACTGGTGGCTTCCGACAAAAAACTCAACTCGATACTTTAAACCAGGGCGTTGATGTCTTAATAGCTACACCTGGCCGTTTTCTCTTCCTCATCAACCAAGGCTTCTTGCACTTAACAAATCTAACATGTGCTGTCTTGGATGAGGTTGATATCCTCTTTGGCGATGAGGACTTCGAAAAGGCTCTTCAATGCTTGATTAGTTCTTCACCGGTGGACACACAATATTTATTTGTAACTGCTACTTTACCAAAAAATGTTTACAGCAAACTGGTTGAAGTTTTTCCTGATTGTGAAATGGTCATGGGACCTAGTATGCATCGAATAAATTCTCGCCTTGAAGAGATAATAGTAGATTGTAGTGGGGAAGATGGACAAGAAAAAACTCTCGACACAGCATTTTTGAACAAGAAAGCTGCTCTTCTGCAGCTTGCGGAGAAGAATCGCGTCCCAAGAACTATTGTTTTCTGCAACAAAATTGAAACATGCAGAAAAGTTGAAAATGCATTAAACCGTTTTGATAGAAAGGGAATTCGCATGCAAGTTCTACCTTTCCATGCTGCCATGACACAAGAATCGCGGCTTGCTAGTATGAAAGAGTTTACACGTTCTCCACCAAAAGAACTGTCCCAGTTTATGGTTTGCACGGACAGAGCTTCACGGGGAATTGACTTCACTAGAGTGGATCATGTAATACTTTTTGACTATCCACGTGATCCAAGTGAATATGTACGGCGTGTTGGAAGAACAGCCAGAGGTGCCAGGGGACAGGGCAAGGCATTTATCTTTGTTGTTGGCAAGCAAGTATCCCTTGCACGAAAAGTAATGGAAAGAAATCGGAAGGGTCATCCACTGCATGATGTACCTTCGGCTTATGAGTATTGA 1614 0.4207 MKMVVVAQGVCGKALLFGIGVGVRPRRPTKQFVFFVSSNSKDKTTSFGRLKVEKVNALIHRTKQNTTKRKQLLQPEDEDEDNSASATATTRRQQQQQQQQHTHSRVGWGDNRVSSKSLALASEDTNFFSLKSFKGIGCADFMIESLHNLSLTRPSNIQAMSFPPVIAGKSCIIADQSGSGKTLAYLVPIIQRLRQQELQGLHKSSSQSPTLLILAPTAELASQVFHNCRSISKSGVVPFKSMLVTGGFRQKTQLDTLNQGVDVLIATPGRFLFLINQGFLHLTNLTCAVLDEVDILFGDEDFEKALQCLISSSPVDTQYLFVTATLPKNVYSKLVEVFPDCEMVMGPSMHRINSRLEEIIVDCSGEDGQEKTLDTAFLNKKAALLQLAEKNRVPRTIVFCNKIETCRKVENALNRFDRKGIRMQVLPFHAAMTQESRLASMKEFTRSPPKELSQFMVCTDRASRGIDFTRVDHVILFDYPRDPSEYVRRVGRTARGARGQGKAFIFVVGKQVSLARKVMERNRKGHPLHDVPSAYEY* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4471 537 Gene3D - 79 344 IPR027417 -
Mtr3g4471 537 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 379 537 IPR001650 -
Mtr3g4471 537 Gene3D - 349 530 IPR027417 -
Mtr3g4471 537 SMART helicmild6 407 497 IPR001650 -
Mtr3g4471 537 SMART ultradead3 150 359 IPR014001 -
Mtr3g4471 537 CDD SF2_C_DEAD 356 507 - -
Mtr3g4471 537 Pfam Helicase conserved C-terminal domain 380 496 IPR001650 -
Mtr3g4471 537 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 38 536 - -
Mtr3g4471 537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 508 IPR027417 -
Mtr3g4471 537 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 38 536 - -
Mtr3g4471 537 CDD DEADc 142 330 - -
Mtr3g4471 537 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 162 344 IPR014001 -
Mtr3g4471 537 MobiDBLite consensus disorder prediction 86 110 - -
Mtr3g4471 537 MobiDBLite consensus disorder prediction 63 110 - -
Mtr3g4471 537 Pfam DEAD/DEAH box helicase 156 330 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4471 Mtr-Chr3 58700255 58703332 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4471 130 518 Eukaryotic Initiation Factors Gene Family AT3G19760 26.221 4.32e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4471 K13179 - gmx:100780849 687.952